Pinocembrin

Details

Top
Internal ID d0ea4b6c-4694-4031-8023-507deac6cd30
Taxonomy Phenylpropanoids and polyketides > Flavonoids > Flavans > Flavanones
IUPAC Name (2S)-5,7-dihydroxy-2-phenyl-2,3-dihydrochromen-4-one
SMILES (Canonical) C1C(OC2=CC(=CC(=C2C1=O)O)O)C3=CC=CC=C3
SMILES (Isomeric) C1[C@H](OC2=CC(=CC(=C2C1=O)O)O)C3=CC=CC=C3
InChI InChI=1S/C15H12O4/c16-10-6-11(17)15-12(18)8-13(19-14(15)7-10)9-4-2-1-3-5-9/h1-7,13,16-17H,8H2/t13-/m0/s1
InChI Key URFCJEUYXNAHFI-ZDUSSCGKSA-N
Popularity 294 references in papers

Physical and Chemical Properties

Top
Molecular Formula C15H12O4
Molecular Weight 256.25 g/mol
Exact Mass 256.07355886 g/mol
Topological Polar Surface Area (TPSA) 66.80 Ų
XlogP 2.70
Atomic LogP (AlogP) 2.80
H-Bond Acceptor 4
H-Bond Donor 2
Rotatable Bonds 1

Synonyms

Top
480-39-7
Dihydrochrysin
Galangin flavanone
(+)-Pinocembrin
5,7-Dihydroxyflavanone
(S)-5,7-dihydroxy-2-phenylchroman-4-one
(2S)-pinocembrin
(S)-5,7-dihydroxyflavanone
Pinocembrin (6CI)
4H-1-Benzopyran-4-one, 2,3-dihydro-5,7-dihydroxy-2-phenyl-, (2S)-
There are more than 10 synonyms. If you wish to see them all click here.

2D Structure

Top
2D Structure of Pinocembrin

3D Structure

Top

ADMET Properties (via admetSAR 2)

Top
Target Value Probability (raw) Probability (%)
Human Intestinal Absorption + 0.9450 94.50%
Caco-2 + 0.5248 52.48%
Blood Brain Barrier - 0.7750 77.50%
Human oral bioavailability - 0.7429 74.29%
Subcellular localzation Mitochondria 0.7583 75.83%
OATP2B1 inhibitior - 1.0000 100.00%
OATP1B1 inhibitior + 0.9604 96.04%
OATP1B3 inhibitior + 0.9480 94.80%
MATE1 inhibitior - 0.9200 92.00%
OCT2 inhibitior - 0.9500 95.00%
BSEP inhibitior - 0.8313 83.13%
P-glycoprotein inhibitior - 0.8983 89.83%
P-glycoprotein substrate - 0.9692 96.92%
CYP3A4 substrate - 0.5805 58.05%
CYP2C9 substrate - 1.0000 100.00%
CYP2D6 substrate - 0.7429 74.29%
CYP3A4 inhibition + 0.8988 89.88%
CYP2C9 inhibition + 0.8949 89.49%
CYP2C19 inhibition + 0.8994 89.94%
CYP2D6 inhibition - 0.7463 74.63%
CYP1A2 inhibition + 0.9106 91.06%
CYP2C8 inhibition + 0.4941 49.41%
CYP inhibitory promiscuity + 0.7121 71.21%
UGT catelyzed + 0.9000 90.00%
Carcinogenicity (binary) - 0.9600 96.00%
Carcinogenicity (trinary) Non-required 0.6152 61.52%
Eye corrosion - 0.9920 99.20%
Eye irritation + 0.9580 95.80%
Skin irritation - 0.5127 51.27%
Skin corrosion - 0.9616 96.16%
Ames mutagenesis - 0.5800 58.00%
Human Ether-a-go-go-Related Gene inhibition - 0.6626 66.26%
Micronuclear + 0.8059 80.59%
Hepatotoxicity - 0.5875 58.75%
skin sensitisation - 0.8697 86.97%
Respiratory toxicity + 0.5889 58.89%
Reproductive toxicity + 0.8778 87.78%
Mitochondrial toxicity + 0.7000 70.00%
Nephrotoxicity + 0.6455 64.55%
Acute Oral Toxicity (c) II 0.3682 36.82%
Estrogen receptor binding + 0.7210 72.10%
Androgen receptor binding + 0.6394 63.94%
Thyroid receptor binding - 0.5096 50.96%
Glucocorticoid receptor binding + 0.5789 57.89%
Aromatase binding + 0.7123 71.23%
PPAR gamma + 0.8225 82.25%
Honey bee toxicity - 0.8838 88.38%
Biodegradation - 0.7500 75.00%
Crustacea aquatic toxicity - 0.5300 53.00%
Fish aquatic toxicity + 0.7714 77.14%

Targets

Top

Proven Targets:

CHEMBL ID UniProt ID Name Min activity Assay type Source
CHEMBL1978 P11511 Cytochrome P450 19A1 900 nM
900 nM
IC50
IC50
DOI: 10.1039/C3MD00166K
via Super-PRED
CHEMBL2231 P04798 Cytochrome P450 1A1 7906 nM
IC50
PMID: 20696580
CHEMBL3356 P05177 Cytochrome P450 1A2 1491 nM
IC50
PMID: 20696580
CHEMBL4878 Q16678 Cytochrome P450 1B1 1679 nM
IC50
PMID: 20696580

Predicted Targets (via Super-PRED):

CHEMBL ID UniProt ID Name Probability Model accuracy
CHEMBL5619 P27695 DNA-(apurinic or apyrimidinic site) lyase 98.78% 91.11%
CHEMBL3108638 O15164 Transcription intermediary factor 1-alpha 94.86% 95.56%
CHEMBL3038477 P67870 Casein kinase II alpha/beta 92.66% 99.23%
CHEMBL2581 P07339 Cathepsin D 91.95% 98.95%
CHEMBL1806 P11388 DNA topoisomerase II alpha 88.48% 89.00%
CHEMBL1293249 Q13887 Kruppel-like factor 5 85.78% 86.33%
CHEMBL1860 P10827 Thyroid hormone receptor alpha 85.19% 99.15%
CHEMBL3137262 O60341 LSD1/CoREST complex 83.62% 97.09%
CHEMBL3251 P19838 Nuclear factor NF-kappa-B p105 subunit 82.49% 96.09%
CHEMBL1929 P47989 Xanthine dehydrogenase 82.09% 96.12%
CHEMBL2553 Q15418 Ribosomal protein S6 kinase alpha 1 81.33% 85.11%
CHEMBL4208 P20618 Proteasome component C5 80.47% 90.00%

Plants that contains it

Top
Below are displayed all the plants proven (via scientific papers) to contain this compound!
To see more specific details click the taxa you are interested in.
Abies alba
Abies pinsapo subsp. marocana
Acacia constricta
Acanthosyris paulo-alvinii
Acer saccharum
Aconitum contortum
Acritopappus confertus
Adenostoma sparsifolium
Adina trichotoma
Afraegle paniculata
Afrocarpus gracilior
Agave xylonacantha
Ageratum houstonianum
Aglaia perviridis
Alnus maximowiczii
Alnus sieboldiana
Alpinia mutica
Alpinia oxyphylla
Alpinia rafflesiana
Alpinia zerumbet
Alstonia spectabilis
Ambrosia monogyra
Amentotaxus argotaenia
Amorphophallus konjac
Ampelocera edentula
Angelica acutiloba
Aniba santalodora
Anodendron affine
Anthemis cretica
Antiphiona pinnatisecta
Arachniodes carvifolia
Ardisia japonica
Arnica mollis
Arnica parryi
Artemisia argyi
Artemisia campestris
Artemisia dracunculus
Astragalus circassicus
Astragalus glycyphyllos
Athrixia elata
Baccharis aliena
Baccharis vaccinoides
Beilschmiedia madang
Bethencourtia palmensis
Betula alnoides
Boesenbergia rotunda
Boswellia ovalifoliolata
Brassica carinata
Bryonia alba
Buxus hildebrandtii
Callicarpa acuminata
Calophyllum inophyllum
Campanula bayerniana
Carpha glomerata
Cassinia arcuata
Cassinia quinquefaria
Cassinia subtropica
Castanea mollissima
Caucasalia pontica
Cedrela salvadorensis
Centaurea cheiranthifolia
Centaurea scoparia
Centaurea sphaerocephala subsp. sphaerocephala
Ceriops tagal
Chenopodium vulvaria
Cistus laurifolius
Cladanthus arabicus
Cleome droserifolia
Colchicum arenarium
Colchicum filifolium
Combretum albopunctatum
Combretum apiculatum
Cotinus coggygria
Cratoxylum formosum subsp. pruniflorum
Cressa cretica
Croton geayi
Croton gratissimus
Cryptocarya concinna
Cryptocarya obovata
Cryptocarya strictifolia
Cyanostegia angustifolia
Cylindrolobus linearifolius
Cymopterus terebinthinus
Dacrycarpus dacrydioides
Dactylorhiza viridis
Dalbergia louvelii
Dalbergia nitidula
Dalbergia odorifera
Dalbergia parviflora
Dalbergia sissoo
Daphnandra johnsonii
Dennstaedtia zeylanica
Desmos cochinchinensis
Dialium excelsum
Dianella revoluta
Diplopterygium glaucum
Dodonaea viscosa
Dolichlasium lagascae
Drymaria cordata
Drypetes tessmanniana
Echinacea simulata
Eremophila flaccida
Eremurus chinensis
Eriodictyon californicum
Eriodictyon californicum
Erythrina burttii
Erythrina subumbrans
Escontria chiotilla
Eucalyptus resinifera
Eucalyptus sieberi
Eucryphia cordifolia
Euphorbia hirta
Euphorbia hylonoma
Euphrasia nana
Eurycoma harmandiana
Flourensia retinophylla
Gaillardia coahuilensis
Galium latoramosum
Garcinia gummi-gutta
Ginkgo biloba
Glycyrrhiza
Glycyrrhiza glabra
Glycyrrhiza inflata
Glycyrrhiza lepidota
Glycyrrhiza uralensis
Glycyrrhiza uralensis
Goniothalamus borneensis
Goniothalamus griffithii
Gratiola officinalis
Grazielia serrata
Greyia flanaganii
Gyrothyra underwoodiana
Hardenbergia violacea
Helichrysum cymosum
Helichrysum formosissimum
Helichrysum forskahlii
Helichrysum oreophilum
Helichrysum trilineatum
Heliotropium marifolium
Helleborus niger subsp. macranthus
Hertia cheirifolia
Hippeastrum aulicum
Hypericum reptans
Iryanthera polyneura
Ixeris japonica
Jacobaea erucifolia subsp. argunensis
Kalanchoe integra
Kniphofia foliosa
Kokoona ochracea
Lagochilus leiacanthus
Lamprolobium fruticosum
Lepechinia urbanii
Licaria chrysophylla
Lindelofia anchusoides subsp. macrostyla
Lindera umbellata
Lippia origanoides
Litsea glaucescens
Litsea rubescens
Lonchocarpus chiricanus
Lophopappus tarapacanus
Lychnophora diamantinana
Lychnophora markgravii
Lychnophora pohlii
Lychnophora staavioides
Lycopodium japonicum
Lysimachia fordiana
Maackia tashiroi
Machilus obovatifolia
Maclura cochinchinensis
Melaleuca cuticularis
Melaleuca rugulosa
Mentha pulegium
Mentzelia decapetala
Mikania grazielae
Mimosa pigra
Mitracarpus hirtus
Monoon cupulare
Mucuna holtonii
Muntingia calabura
Neolitsea villosa
Nicoteba betonica
Oncosiphon sabulosus
Ononis natrix
Ormosia hosiei
Ornithoglossum viride
Oroxylum indicum
Orthosiphon aristatus
Oxytropis falcata
Ozothamnus stirlingii
Pachygone dasycarpa
Parkia biglobosa
Pericopsis angolensis
Petasites radiatus
Petunia axillaris
Phoebe grandis
Pinalia pandurata
Pinus aristata
Pinus banksiana
Pinus contorta
Pinus morrisonicola
Pinus ponderosa
Pinus pumila
Pinus sibirica
Pinus strobus
Pinus virginiana
Pinus wallichiana
Piper callosum
Piper gaudichaudianum
Piper hispidum
Piper hostmannianum
Piper sarmentosum
Pittocaulon bombycophole
Polyachyrus sphaerocephalus
Populus balsamifera
Populus cathayana
Populus deltoides
Populus laurifolia
Populus nigra
Populus suaveolens
Populus violascens
Populus yunnanensis
Prioria pinnata
Prunus leveilleana
Pseudoconyza viscosa
Pseudotsuga menziesii
Pseudotsuga sinensis var. sinensis
Pterocaulon serrulatum
Pterolobium hexapetalum
Pulsatilla chinensis
Punica granatum
Pyracantha coccinea
Quercus marilandica
Ranunculus asiaticus
Ratibida columnifera
Remirea maritima
Rhododendron dauricum
Rubia argyi
Rubus laciniatus
Rubus pileatus
Rubus pungens
Salix rosmarinifolia
Salvia barrelieri
Salvia lavanduloides
Salvia officinalis subsp. lavandulifolia
Salvia patens
Salvia virgata
Sanguisorba minor
Saussurea salicifolia
Schizanthus tricolor
Scutellaria discolor
Scutellaria lateriflora
Scutia buxifolia
Senecio canchahuinganquensis
Sideritis lanata
Sinapis alba
Solanum lanceolatum
Soymida febrifuga
Sphaeranthus confertifolius
Stellaria dichotoma
Strychnos amazonica
Strychnos tomentosa
Swartzia apetala
Syzygium cumini
Syzygium samarangense
Tamarix gallica
Thelypteris esquirolii
Turnera diffusa
Uncaria africana
Uvaria chamae
Uvaria dulcis
Uvaria lucida
Vachellia pennatula
Vachellia vernicosa
Vepris gabonensis
Viburnum erubescens
Viguiera pinnatilobata
Viola hondoensis
Viscum coloratum
Walsura pinnata
Wikstroemia indica
Xanthorhiza simplicissima
Xylopia emarginata
Zuccagnia punctata

Cross-Links

Top
PubChem 68071
NPASS NPC243083
ChEMBL CHEMBL399910
LOTUS LTS0141508
wikiData Q76005702