Procyanidin B3

Details

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Internal ID 488b650a-c7b7-40d2-8379-c03bf28e9ac6
Taxonomy Phenylpropanoids and polyketides > Flavonoids > Biflavonoids and polyflavonoids
IUPAC Name (2R,3S)-2-(3,4-dihydroxyphenyl)-8-[(2R,3S,4S)-2-(3,4-dihydroxyphenyl)-3,5,7-trihydroxy-3,4-dihydro-2H-chromen-4-yl]-3,4-dihydro-2H-chromene-3,5,7-triol
SMILES (Canonical) C1C(C(OC2=C1C(=CC(=C2C3C(C(OC4=CC(=CC(=C34)O)O)C5=CC(=C(C=C5)O)O)O)O)O)C6=CC(=C(C=C6)O)O)O
SMILES (Isomeric) C1[C@@H]([C@H](OC2=C1C(=CC(=C2[C@H]3[C@@H]([C@H](OC4=CC(=CC(=C34)O)O)C5=CC(=C(C=C5)O)O)O)O)O)C6=CC(=C(C=C6)O)O)O
InChI InChI=1S/C30H26O12/c31-13-7-20(37)24-23(8-13)41-29(12-2-4-16(33)19(36)6-12)27(40)26(24)25-21(38)10-17(34)14-9-22(39)28(42-30(14)25)11-1-3-15(32)18(35)5-11/h1-8,10,22,26-29,31-40H,9H2/t22-,26-,27-,28+,29+/m0/s1
InChI Key XFZJEEAOWLFHDH-AVFWISQGSA-N
Popularity 49 references in papers

Physical and Chemical Properties

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Molecular Formula C30H26O12
Molecular Weight 578.50 g/mol
Exact Mass 578.14242626 g/mol
Topological Polar Surface Area (TPSA) 221.00 Ų
XlogP 2.40
Atomic LogP (AlogP) 3.00
H-Bond Acceptor 12
H-Bond Donor 10
Rotatable Bonds 3

Synonyms

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23567-23-9
Proanthocyanidin B3
Procyanidin B-3
CHEBI:75630
UNII-2TC1A0KEAQ
2TC1A0KEAQ
Catechin(4a->8)catechin
2,3-trans-proanthocyanidin
CHEMBL501490
catechin-(4alpha->8)-catechin
There are more than 10 synonyms. If you wish to see them all click here.

2D Structure

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2D Structure of Procyanidin B3

3D Structure

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ADMET Properties (via admetSAR 2)

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Target Value Probability (raw) Probability (%)
Human Intestinal Absorption + 0.8698 86.98%
Caco-2 - 0.9107 91.07%
Blood Brain Barrier - 0.7000 70.00%
Human oral bioavailability - 0.7857 78.57%
Subcellular localzation Mitochondria 0.4793 47.93%
OATP2B1 inhibitior - 0.5605 56.05%
OATP1B1 inhibitior + 0.9408 94.08%
OATP1B3 inhibitior + 0.9459 94.59%
MATE1 inhibitior - 0.9600 96.00%
OCT2 inhibitior - 0.8750 87.50%
BSEP inhibitior + 0.9057 90.57%
P-glycoprotein inhibitior + 0.6991 69.91%
P-glycoprotein substrate - 0.8066 80.66%
CYP3A4 substrate + 0.5743 57.43%
CYP2C9 substrate - 0.5994 59.94%
CYP2D6 substrate + 0.5264 52.64%
CYP3A4 inhibition - 0.8309 83.09%
CYP2C9 inhibition - 0.9071 90.71%
CYP2C19 inhibition - 0.9026 90.26%
CYP2D6 inhibition - 0.9231 92.31%
CYP1A2 inhibition - 0.9155 91.55%
CYP2C8 inhibition + 0.6770 67.70%
CYP inhibitory promiscuity - 0.8625 86.25%
UGT catelyzed + 0.7000 70.00%
Carcinogenicity (binary) - 0.9800 98.00%
Carcinogenicity (trinary) Non-required 0.6139 61.39%
Eye corrosion - 0.9904 99.04%
Eye irritation - 0.8204 82.04%
Skin irritation - 0.6044 60.44%
Skin corrosion - 0.9317 93.17%
Ames mutagenesis + 0.6700 67.00%
Human Ether-a-go-go-Related Gene inhibition + 0.8993 89.93%
Micronuclear + 0.7859 78.59%
Hepatotoxicity - 0.7375 73.75%
skin sensitisation - 0.7665 76.65%
Respiratory toxicity + 0.6111 61.11%
Reproductive toxicity + 0.8000 80.00%
Mitochondrial toxicity + 0.6000 60.00%
Nephrotoxicity - 0.6052 60.52%
Acute Oral Toxicity (c) IV 0.5696 56.96%
Estrogen receptor binding + 0.7555 75.55%
Androgen receptor binding + 0.7545 75.45%
Thyroid receptor binding + 0.6710 67.10%
Glucocorticoid receptor binding + 0.5949 59.49%
Aromatase binding - 0.5919 59.19%
PPAR gamma + 0.7488 74.88%
Honey bee toxicity - 0.7797 77.97%
Biodegradation - 0.8000 80.00%
Crustacea aquatic toxicity + 0.5500 55.00%
Fish aquatic toxicity + 0.6855 68.55%

Targets

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Proven Targets:

CHEMBL ID UniProt ID Name Min activity Assay type Source
No proven targets yet!

Predicted Targets (via Super-PRED):

CHEMBL ID UniProt ID Name Probability Model accuracy
CHEMBL5619 P27695 DNA-(apurinic or apyrimidinic site) lyase 99.52% 91.11%
CHEMBL4040 P28482 MAP kinase ERK2 98.87% 83.82%
CHEMBL1951 P21397 Monoamine oxidase A 96.88% 91.49%
CHEMBL3251 P19838 Nuclear factor NF-kappa-B p105 subunit 94.71% 96.09%
CHEMBL1929 P47989 Xanthine dehydrogenase 93.59% 96.12%
CHEMBL3137262 O60341 LSD1/CoREST complex 92.66% 97.09%
CHEMBL1806 P11388 DNA topoisomerase II alpha 89.86% 89.00%
CHEMBL1860 P10827 Thyroid hormone receptor alpha 88.20% 99.15%
CHEMBL2535 P11166 Glucose transporter 86.62% 98.75%
CHEMBL3108638 O15164 Transcription intermediary factor 1-alpha 86.17% 95.56%
CHEMBL4208 P20618 Proteasome component C5 84.92% 90.00%
CHEMBL3401 O75469 Pregnane X receptor 84.40% 94.73%
CHEMBL3194 P02766 Transthyretin 83.39% 90.71%
CHEMBL236 P41143 Delta opioid receptor 83.31% 99.35%
CHEMBL4203 Q9HAZ1 Dual specificity protein kinase CLK4 81.46% 94.45%

Plants that contains it

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Below are displayed all the plants proven (via scientific papers) to contain this compound!
To see more specific details click the taxa you are interested in.
Acacia adunca
Acacia baileyana
Actinidia chinensis
Actiniopteris radiata
Adiantum philippense
Aglaia laxiflora
Aizoon africanum
Alangium premnifolium
Alcea rosea
Aldama incana
Aldama oblongifolia
Alkanna cappadocica
Alpinia roxburghii
Angelica tarokoensis
Annona cornifolia
Arachis hypogaea
Archidendron jiringa
Artemisia carvifolia
Artemisia pedemontana subsp. assoana
Artemisia rupestris subsp. rupestris
Artemisia schimperi
Astragalus sempervirens
Atalantia racemosa
Balanops australiana
Bergenia purpurascens
Betula fruticosa
Betula pubescens
Bombax ceiba
Bromelia karatas
Buddleja cordata
Cajanus trinervius
Callicarpa maingayi
Calluna vulgaris
Calostephane divaricata
Camellia sinensis
Capnoides sempervirens
Capsicum annuum
Caragana aurantiaca
Casimiroa tetrameria
Cephalaria uralensis
Chaenomeles sinensis
Chaenomeles speciosa
Chamaecrista kleinii
Chimarrhis turbinata
Cinnamomum aromaticum
Cistus × incanus
Clematicissus simsiana
Colchicum speciosum
Coleogyne ramosissima
Cornus kousa
Crambe tatarica
Crotalaria aegyptiaca
Cryptomeria japonica
Curcuma zedoaria
Cynomorium coccineum subsp. songaricum
Davallia perdurans
Dicoma capensis
Digitalis isabelliana
Diospyros eriantha
Diospyros ferrea
Dumortiera hirsuta
Echeveria secunda
Elephantopus mollis
Epimedium davidii
Ericameria parryi
Erysimum odoratum
Erythroxylum novogranatense
Eucalyptus melliodora
Eucalyptus ovata
Euonymus tingens
Euphorbia cornigera
Euphorbia turczaninowii
Euryops algoensis
Fragaria × ananassa
Fritillaria monantha
Frullania tamarisci
Gardenia jasminoides
Geranium sylvaticum
Geranium thunbergii
Globba variabilis
Gnetum latifolium
Gomortega keule
Goniothalamus malayanus
Gonzalezia decurrens
Hamamelis virginiana
Haplophyllum ferganicum
Hedysarum inundatum
Helianthus maximiliani
Heliomeris multiflora
Heterotheca inuloides
Hoffmannia strigillosa
Humulus lupulus
Hylocomium splendens
Hypericum laricifolium
Ilex amara
Ipomoea digitata
Iris ensata
Isodon japonicus
Juglans sigillata
Juniperus sabina
Knightia excelsa
Kokoona reflexa
Larix gmelinii
Lasiosiphon lampranthus
Leonurus glaucescens
Lepidium draba
Lepisorus ussuriensis
Lespedeza capitata
Ligularia dentata
Liquidambar styraciflua
Litsea pungens
Lotus pedunculatus
Lysimachia mauritiana
Maesa ramentacea
Malus pumila
Marrubium anisodon
Micromeria pineolens
Millettia erythrocalyx
Millettia laurentii
Monodora tenuifolia
Myrsine lancifolia
Naucleopsis ternstroemiiflora
Nelumbo nucifera
Nuphar lutea
Ocimum tenuiflorum
Ocotea pittieri
Oenothera biennis
Ononis vaginalis
Paeonia obovata
Pastinaca sativa
Paullinia cupana
Peltostigma guatemalense
Petasites hybridus
Phaseolus vulgaris
Phoenix loureiroi
Picea mariana
Pinus strobus
Pinus sylvestris
Pluchea odorata
Potentilla longifolia
Premna odorata
Prunus dulcis
Prunus persica
Pseudotsuga menziesii
Psidium guajava
Pteris semipinnata
Pyrola asarifolia subsp. asarifolia
Quercus dentata
Quercus ilex
Quercus marilandica
Quercus miyagii
Quercus petraea subsp. petraea
Quercus robur
Raulinoreitzia crenulata
Rauvolfia vomitoria
Rhodanthe chlorocephala subsp. rosea
Rhodiola semenovii
Rosa cymosa
Rosa henryi
Rosa laevigata
Rosa rugosa
Rumex acetosa
Rumex maritimus
Salacia lehmbachii
Salacia madagascariensis
Salix caprea
Salix sieboldiana
Salvia hispanica
Salvia parryi
Salvia syriaca
Salvia yosgadensis
Sanguisorba officinalis
Saussurea lyrata
Scopolia carniolica
Scorzonera pseudodivaricata
Scutellaria amoena
Senecio vernalis
Sideritis brevibracteata
Sideroxylon cubense
Solanum acaule
Solanum laxum
Sonchus ortunoi
Staphylea ternata
Stenocereus griseus
Styrax ferrugineus
Swertia delavayi
Swertia franchetiana
Syncarpia hillii
Taxillus kaempferi
Taxus mairei
Thalictrum longistylum
Toona sinensis
Uncaria gambir
Vaccinium oxycoccos
Vaccinium vitis-idaea
Vateria indica
Vepris hiernii
Viburnum urceolatum
Vicia faba
Vigna angularis
Vincetoxicum hirundinaria
Vismia jefensis
Vitis vinifera
Wikstroemia retusa
Xyris pterygoblephara
Zanthoxylum tetraspermum

Cross-Links

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PubChem 146798
NPASS NPC58190
ChEMBL CHEMBL501490
LOTUS LTS0151498
wikiData Q7247553