Hederagenin

Details

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Internal ID a0d61d8b-fb0a-4989-9a6c-b2a820148b43
Taxonomy Lipids and lipid-like molecules > Prenol lipids > Triterpenoids
IUPAC Name (4aS,6aR,6aS,6bR,8aR,9R,10S,12aR,14bS)-10-hydroxy-9-(hydroxymethyl)-2,2,6a,6b,9,12a-hexamethyl-1,3,4,5,6,6a,7,8,8a,10,11,12,13,14b-tetradecahydropicene-4a-carboxylic acid
SMILES (Canonical) CC1(CCC2(CCC3(C(=CCC4C3(CCC5C4(CCC(C5(C)CO)O)C)C)C2C1)C)C(=O)O)C
SMILES (Isomeric) C[C@]12CC[C@@H]([C@@]([C@@H]1CC[C@@]3([C@@H]2CC=C4[C@]3(CC[C@@]5([C@H]4CC(CC5)(C)C)C(=O)O)C)C)(C)CO)O
InChI InChI=1S/C30H48O4/c1-25(2)13-15-30(24(33)34)16-14-28(5)19(20(30)17-25)7-8-22-26(3)11-10-23(32)27(4,18-31)21(26)9-12-29(22,28)6/h7,20-23,31-32H,8-18H2,1-6H3,(H,33,34)/t20-,21+,22+,23-,26-,27-,28+,29+,30-/m0/s1
InChI Key PGOYMURMZNDHNS-MYPRUECHSA-N
Popularity 718 references in papers

Physical and Chemical Properties

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Molecular Formula C30H48O4
Molecular Weight 472.70 g/mol
Exact Mass 472.35526001 g/mol
Topological Polar Surface Area (TPSA) 77.80 Ų
XlogP 6.80
Atomic LogP (AlogP) 6.21
H-Bond Acceptor 3
H-Bond Donor 3
Rotatable Bonds 2

Synonyms

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465-99-6
Caulosapogenin
Hederagenol
Astrantiagenin E
Hederagenic acid
Hederagenine
NSC 24954
EINECS 207-369-9
(3beta,4alpha)-3,23-Dihydroxyolean-12-en-28-oic acid
UNII-RQF57J8212
There are more than 10 synonyms. If you wish to see them all click here.

2D Structure

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2D Structure of Hederagenin

3D Structure

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ADMET Properties (via admetSAR 2)

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Target Value Probability (raw) Probability (%)
Human Intestinal Absorption + 0.9862 98.62%
Caco-2 - 0.5269 52.69%
Blood Brain Barrier + 0.5750 57.50%
Human oral bioavailability - 0.5429 54.29%
Subcellular localzation Mitochondria 0.8419 84.19%
OATP2B1 inhibitior - 0.7171 71.71%
OATP1B1 inhibitior + 0.8745 87.45%
OATP1B3 inhibitior - 0.5699 56.99%
MATE1 inhibitior - 1.0000 100.00%
OCT2 inhibitior - 0.5542 55.42%
BSEP inhibitior + 0.9278 92.78%
P-glycoprotein inhibitior - 0.8520 85.20%
P-glycoprotein substrate - 0.8020 80.20%
CYP3A4 substrate + 0.6476 64.76%
CYP2C9 substrate - 0.6653 66.53%
CYP2D6 substrate - 0.8586 85.86%
CYP3A4 inhibition - 0.8608 86.08%
CYP2C9 inhibition - 0.8469 84.69%
CYP2C19 inhibition - 0.9159 91.59%
CYP2D6 inhibition - 0.9434 94.34%
CYP1A2 inhibition - 0.8926 89.26%
CYP2C8 inhibition - 0.6323 63.23%
CYP inhibitory promiscuity - 0.8884 88.84%
UGT catelyzed - 0.9000 90.00%
Carcinogenicity (binary) - 0.9900 99.00%
Carcinogenicity (trinary) Non-required 0.7044 70.44%
Eye corrosion - 0.9930 99.30%
Eye irritation - 0.9117 91.17%
Skin irritation - 0.5182 51.82%
Skin corrosion - 0.9636 96.36%
Ames mutagenesis - 0.9200 92.00%
Human Ether-a-go-go-Related Gene inhibition - 0.3712 37.12%
Micronuclear - 0.9000 90.00%
Hepatotoxicity - 0.8750 87.50%
skin sensitisation - 0.8274 82.74%
Respiratory toxicity + 0.5778 57.78%
Reproductive toxicity + 0.9111 91.11%
Mitochondrial toxicity + 0.7000 70.00%
Nephrotoxicity + 0.4911 49.11%
Acute Oral Toxicity (c) III 0.7595 75.95%
Estrogen receptor binding + 0.8095 80.95%
Androgen receptor binding + 0.7066 70.66%
Thyroid receptor binding + 0.5997 59.97%
Glucocorticoid receptor binding + 0.8191 81.91%
Aromatase binding + 0.7242 72.42%
PPAR gamma + 0.6325 63.25%
Honey bee toxicity - 0.8974 89.74%
Biodegradation - 0.8250 82.50%
Crustacea aquatic toxicity - 0.7300 73.00%
Fish aquatic toxicity + 0.9889 98.89%

Targets

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Proven Targets:

CHEMBL ID UniProt ID Name Min activity Assay type Source
CHEMBL4081 P13726 Coagulation factor III 0.221 nM
1.294 nM
IC50
IC50
via Super-PRED
via Super-PRED
CHEMBL1697668 Q9Y6L6 Solute carrier organic anion transporter family member 1B1 3801.89 nM
IC50
PMID: 23571415
CHEMBL1743121 Q9NPD5 Solute carrier organic anion transporter family member 1B3 891.25 nM
IC50
PMID: 23571415

Predicted Targets (via Super-PRED):

CHEMBL ID UniProt ID Name Probability Model accuracy
CHEMBL335 P18031 Protein-tyrosine phosphatase 1B 94.04% 95.17%
CHEMBL3137262 O60341 LSD1/CoREST complex 92.08% 97.09%
CHEMBL221 P23219 Cyclooxygenase-1 89.71% 90.17%
CHEMBL4203 Q9HAZ1 Dual specificity protein kinase CLK4 89.23% 94.45%
CHEMBL3251 P19838 Nuclear factor NF-kappa-B p105 subunit 87.46% 96.09%
CHEMBL3108638 O15164 Transcription intermediary factor 1-alpha 86.56% 95.56%
CHEMBL5619 P27695 DNA-(apurinic or apyrimidinic site) lyase 85.79% 91.11%
CHEMBL1994 P08235 Mineralocorticoid receptor 83.96% 100.00%
CHEMBL3807 P17706 T-cell protein-tyrosine phosphatase 83.28% 93.00%
CHEMBL5608 Q16288 NT-3 growth factor receptor 81.69% 95.89%

Plants that contains it

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Below are displayed all the plants proven (via scientific papers) to contain this compound!
To see more specific details click the taxa you are interested in.
Abrus precatorius
Acacia aulacocarpa
Actiniopteris australis
Akebia quinata
Akebia trifoliata
Albizia schimperiana
Anemoclema glaucifolium
Anemonastrum flaccidum
Anisomeles indica
Aralia elata var. elata
Ardisia neriifolia
Arisaema erubescens
Aristolochia manshuriensis
Aspidosperma subincanum
Atractylis carduus
Baccharis sarothroides
Baroniella acuminata
Bellis perennis
Blighia sapida
Boehmeria nivea
Bryum weigelii
Caltha palustris
Campsis grandiflora
Canarium album
Capparis flavicans
Caryocar microcarpum
Casimiroa tetrameria
Caulophyllum thalictroides
Cephalaria nachiczevanica
Cephalaria paphlagonica
Cephalaria transsylvanica
Chenopodium quinoa
Cistanche phelypaea
Clematicissus simsiana
Clematis chinensis
Clematis hexapetala
Clematis vitalba
Colchicum speciosum
Cryptocarya aschersoniana
Cussonia holstii
Cydonia oblonga
Cymbopogon jwarancusa subsp. olivieri
Dipsacus asperoides
Dipsacus inermis
Dipsacus laciniatus
Drypetes inaequalis
Drypetes molunduana
Elattostachys apetala
Eucalyptus perriniana
Eupatorium argentinum
Fatsia japonica
Fritillaria thunbergii
Galeopsis angustifolia
Garcinia madruno
Gardenia ternifolia
Guatteria ucayalina
Guettarda angelica
Hedera colchica
Hedera helix
Hedera hibernica
Hedyotis lawsoniae
Heliomeris multiflora
Hydrocotyle ranunculoides
Ilex hainanensis
Ipomoea hederacea
Isodon flexicaulis
Juniperus brevifolia
Kalopanax septemlobus
Lantana camara
Leuzea carthamoides
Ligularia dentata
Lonicera confusa
Lonicera hypoglauca
Lonicera japonica
Lonicera macrantha
Malus sieboldii
Medicago lupulina
Medicago polymorpha
Medicago sativa
Melicope durifolia
Micranthes stellaris
Mimusops elengi
Morinda citrifolia
Morus alba
Morus rubra
Mosla chinensis
Neolamarckia cadamba
Nephelium lappaceum
Nigella sativa
Oxytropis pseudoglandulosa
Paeonia lactiflora
Paeonia rockii
Paeonia suffruticosa
Pedicularis plicata
Peritassa compta
Phlomoides umbrosa
Phytolacca dodecandra
Plantago cornuti
Plectranthus sylvestris
Plinia cauliflora
Polyscias fulva
Pseudoclausena chrysogyne
Psiadia dentata
Pulsatilla cernua
Pulsatilla chinensis
Rhabdodendron amazonicum
Rhabdodendron macrophyllum
Rosa laevigata
Rubia cordifolia
Salvia palaestina
Salvia sclareoides
Sapindus mukorossi
Sapindus saponaria
Senecio vernalis
Serjania salzmanniana
Serjania triquetra
Sideritis nutans
Sonchus gummifer
Spinacia oleracea
Stachyurus himalaicus
Stauntonia chinensis
Stauntonia hexaphylla
Stauntonia obovatifoliola
Stenomesson miniatum
Stephania longa
Syzygium sandwicense
Tulipa sylvestris
Uncaria guianensis
Vaccaria hispanica
Vatica harmandiana
Viburnum chingii
Viburnum erubescens
Wikstroemia hainanensis
Xylopia brasiliensis
Xyris capensis var. capensis
Zygophyllum obliquum

Cross-Links

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PubChem 73299
NPASS NPC270768
ChEMBL CHEMBL486400
LOTUS LTS0157813
wikiData Q5697238