Kuromanin

Details

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Internal ID 9795a9cc-6f48-485e-aea9-084f2d0c3278
Taxonomy Phenylpropanoids and polyketides > Flavonoids > Flavonoid glycosides > Anthocyanins > Anthocyanidin-3-O-glycosides
IUPAC Name (2S,3R,4S,5S,6R)-2-[2-(3,4-dihydroxyphenyl)-5,7-dihydroxychromenylium-3-yl]oxy-6-(hydroxymethyl)oxane-3,4,5-triol
SMILES (Canonical) C1=CC(=C(C=C1C2=[O+]C3=CC(=CC(=C3C=C2OC4C(C(C(C(O4)CO)O)O)O)O)O)O)O
SMILES (Isomeric) C1=CC(=C(C=C1C2=[O+]C3=CC(=CC(=C3C=C2O[C@H]4[C@@H]([C@H]([C@@H]([C@H](O4)CO)O)O)O)O)O)O)O
InChI InChI=1S/C21H20O11/c22-7-16-17(27)18(28)19(29)21(32-16)31-15-6-10-12(25)4-9(23)5-14(10)30-20(15)8-1-2-11(24)13(26)3-8/h1-6,16-19,21-22,27-29H,7H2,(H3-,23,24,25,26)/p+1/t16-,17-,18+,19-,21-/m1/s1
InChI Key RKWHWFONKJEUEF-GQUPQBGVSA-O
Popularity 66 references in papers

Physical and Chemical Properties

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Molecular Formula C21H21O11+
Molecular Weight 449.40 g/mol
Exact Mass 449.10838648 g/mol
Topological Polar Surface Area (TPSA) 181.00 Ų
XlogP 0.00
Atomic LogP (AlogP) 0.38
H-Bond Acceptor 10
H-Bond Donor 8
Rotatable Bonds 4

Synonyms

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Chrysanthemin cation
UNII-Q6NK5V5B5O
Q6NK5V5B5O
Cyanidin 3-O-beta-D-glucoside
cyanidin-3-O-beta-D-glucoside
Cyanidin 3-beta-glucoside cation
cyanidin-3-O-glucoside
CHEBI:28426
Chrysanthemin
(2S,3R,4S,5S,6R)-2-(2-(3,4-Dihydroxyphenyl)-5,7-dihydroxychromenylium-3-yl)oxy-6-(hydroxymethyl)oxane-3,4,5-triol
There are more than 10 synonyms. If you wish to see them all click here.

2D Structure

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2D Structure of Kuromanin

3D Structure

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ADMET Properties (via admetSAR 2)

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Target Value Probability (raw) Probability (%)
Human Intestinal Absorption - 0.8136 81.36%
Caco-2 - 0.8921 89.21%
Blood Brain Barrier - 0.6250 62.50%
Human oral bioavailability - 0.7143 71.43%
Subcellular localzation Nucleus 0.4412 44.12%
OATP2B1 inhibitior + 0.5876 58.76%
OATP1B1 inhibitior + 0.9309 93.09%
OATP1B3 inhibitior + 0.9404 94.04%
MATE1 inhibitior - 0.8800 88.00%
OCT2 inhibitior - 0.7750 77.50%
BSEP inhibitior - 0.7183 71.83%
P-glycoprotein inhibitior - 0.6860 68.60%
P-glycoprotein substrate - 0.8592 85.92%
CYP3A4 substrate + 0.5715 57.15%
CYP2C9 substrate - 0.8060 80.60%
CYP2D6 substrate - 0.8268 82.68%
CYP3A4 inhibition - 0.9550 95.50%
CYP2C9 inhibition - 0.9002 90.02%
CYP2C19 inhibition - 0.8426 84.26%
CYP2D6 inhibition - 0.9191 91.91%
CYP1A2 inhibition - 0.8856 88.56%
CYP2C8 inhibition + 0.8164 81.64%
CYP inhibitory promiscuity - 0.7819 78.19%
UGT catelyzed + 0.6000 60.00%
Carcinogenicity (binary) - 0.9900 99.00%
Carcinogenicity (trinary) Non-required 0.6532 65.32%
Eye corrosion - 0.9919 99.19%
Eye irritation - 0.7073 70.73%
Skin irritation - 0.8047 80.47%
Skin corrosion - 0.9630 96.30%
Ames mutagenesis - 0.5137 51.37%
Human Ether-a-go-go-Related Gene inhibition - 0.4694 46.94%
Micronuclear + 0.6359 63.59%
Hepatotoxicity - 0.8321 83.21%
skin sensitisation - 0.9067 90.67%
Respiratory toxicity - 0.5000 50.00%
Reproductive toxicity + 0.6222 62.22%
Mitochondrial toxicity - 0.5375 53.75%
Nephrotoxicity - 0.7457 74.57%
Acute Oral Toxicity (c) III 0.4439 44.39%
Estrogen receptor binding + 0.7517 75.17%
Androgen receptor binding + 0.6917 69.17%
Thyroid receptor binding + 0.5977 59.77%
Glucocorticoid receptor binding + 0.7298 72.98%
Aromatase binding + 0.7175 71.75%
PPAR gamma + 0.7415 74.15%
Honey bee toxicity - 0.7367 73.67%
Biodegradation - 0.7250 72.50%
Crustacea aquatic toxicity - 0.5449 54.49%
Fish aquatic toxicity + 0.7666 76.66%

Targets

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Proven Targets:

CHEMBL ID UniProt ID Name Min activity Assay type Source
CHEMBL284 P27487 Dipeptidyl peptidase IV 420 nM
IC50
via Super-PRED
CHEMBL4660 P28907 Lymphocyte differentiation antigen CD38 6300 nM
IC50
PMID: 21641214

Predicted Targets (via Super-PRED):

CHEMBL ID UniProt ID Name Probability Model accuracy
CHEMBL5619 P27695 DNA-(apurinic or apyrimidinic site) lyase 99.30% 91.11%
CHEMBL1951 P21397 Monoamine oxidase A 96.01% 91.49%
CHEMBL1860 P10827 Thyroid hormone receptor alpha 94.22% 99.15%
CHEMBL1806 P11388 DNA topoisomerase II alpha 92.22% 89.00%
CHEMBL3251 P19838 Nuclear factor NF-kappa-B p105 subunit 92.14% 96.09%
CHEMBL2635 P51452 Dual specificity protein phosphatase 3 89.39% 94.00%
CHEMBL5339 Q5NUL3 G-protein coupled receptor 120 88.82% 95.78%
CHEMBL2581 P07339 Cathepsin D 88.59% 98.95%
CHEMBL3060 Q9Y345 Glycine transporter 2 87.42% 99.17%
CHEMBL3194 P02766 Transthyretin 86.69% 90.71%
CHEMBL1293249 Q13887 Kruppel-like factor 5 86.35% 86.33%
CHEMBL241 Q14432 Phosphodiesterase 3A 84.75% 92.94%
CHEMBL225 P28335 Serotonin 2c (5-HT2c) receptor 84.66% 89.62%
CHEMBL4016 P42262 Glutamate receptor ionotropic, AMPA 2 84.24% 86.92%
CHEMBL3137262 O60341 LSD1/CoREST complex 82.52% 97.09%
CHEMBL3476 O15111 Inhibitor of nuclear factor kappa B kinase alpha subunit 81.60% 95.83%

Plants that contains it

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Below are displayed all the plants proven (via scientific papers) to contain this compound!
To see more specific details click the taxa you are interested in.
Acacia adunca
Acer platanoides
Aconitum violaceum
Actiniopteris radiata
Adiantum philippense
Aeridostachya robusta
Aglaia laxiflora
Akebia trifoliata
Aldama incana
Allium cepa
Allium rosenorum
Allium sativum
Allium schoenoprasum
Allium victorialis
Angelica pubescens
Annona cornifolia
Aronia melanocarpa
Artemisia carvifolia
Artemisia pedemontana subsp. assoana
Astragalus sempervirens
Atractylodes macrocephala
Berberis brandisiana
Callicarpa maingayi
Calostephane divaricata
Caragana aurantiaca
Centaurea virgata subsp. squarrosa
Cephalaria uralensis
Chaenomeles sinensis
Cichorium intybus
Cichorium pumilum
Codonopsis pilosula
Cornus suecica
Crotalaria aegyptiaca
Cynomorium coccineum
Daucus carota
Delphinium shawurense
Dicoma capensis
Digitalis isabelliana
Dracula chimaera
Dumortiera hirsuta
Echeveria secunda
Echium pininana
Ericameria parryi
Erythrina herbacea
Eucalyptus melliodora
Euphorbia turczaninowii
Fagraea gracilipes
Ficus carica
Garcinia xipshuanbannaensis
Geranium sylvaticum
Glycine max
Gnetum latifolium
Goniothalamus malayanus
Gutierrezia microcephala
Haloxylon persicum
Haplophyllum ferganicum
Hedysarum inundatum
Helichrysum graveolens
Hypericum laricifolium
Ipomoea digitata
Iryanthera paraensis
Lathyrus nissolia
Lathyrus odoratus
Leonurus persicus
Lepisorus ussuriensis
Litsea rotundifolia
Lonicera caerulea
Lysimachia mauritiana
Magnolia sieboldii
Marrubium anisodon
Melaleuca decora
Miliusa sinensis
Naucleopsis ternstroemiiflora
Ocimum basilicum
Ocotea pittieri
Olea europaea
Panopsis rubescens
Panzerina lanata
Pastinaca sativa
Peltogyne floribunda
Peltostigma guatemalense
Pennisetum setaceum
Petunia exserta
Phalaris arundinacea
Phaseolus vulgaris
Phragmites australis
Pinus banksiana
Premna odorata
Prunus avium
Prunus cerasus
Prunus persica
Punica granatum
Pyracantha coccinea
Ratibida mexicana
Rauvolfia vomitoria
Rhodanthe chlorocephala subsp. rosea
Ribes nigrum
Ribes rubrum
Rubus chingii
Rubus coreanus
Rubus glaucus
Rubus idaeus
Rumex maritimus
Salvia syriaca
Sambucus canadensis
Sambucus nigra
Scopolia carniolica
Scutellaria amoena
Solanum laxum
Sonchus ortunoi
Styrax ferrugineus
Swertia franchetiana
Theobroma cacao
Tricyrtis formosana
Vaccinium angustifolium
Vaccinium corymbosum
Vaccinium myrtillus
Vaccinium oxycoccos
Vellozia candida
Vernonia steetziana
Viburnum dilatatum
Vigna mungo
Vigna subterranea
Vincetoxicum hirundinaria
Visnea mocanera
Vitis vinifera
Wikstroemia retusa
Zanthoxylum brachyacanthum
Zanthoxylum tetraspermum

Cross-Links

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PubChem 441667
NPASS NPC168579
ChEMBL CHEMBL257839
LOTUS LTS0217835
wikiData Q63399306