Cyanidin

Details

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Internal ID 67bda1f4-cc2f-474e-9d45-f6460f0f1fb0
Taxonomy Phenylpropanoids and polyketides > Flavonoids > Hydroxyflavonoids > 7-hydroxyflavonoids
IUPAC Name 2-(3,4-dihydroxyphenyl)chromenylium-3,5,7-triol
SMILES (Canonical) C1=CC(=C(C=C1C2=[O+]C3=CC(=CC(=C3C=C2O)O)O)O)O
SMILES (Isomeric) C1=CC(=C(C=C1C2=[O+]C3=CC(=CC(=C3C=C2O)O)O)O)O
InChI InChI=1S/C15H10O6/c16-8-4-11(18)9-6-13(20)15(21-14(9)5-8)7-1-2-10(17)12(19)3-7/h1-6H,(H4-,16,17,18,19,20)/p+1
InChI Key VEVZSMAEJFVWIL-UHFFFAOYSA-O
Popularity 1,041 references in papers

Physical and Chemical Properties

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Molecular Formula C15H11O6+
Molecular Weight 287.24 g/mol
Exact Mass 287.05556307 g/mol
Topological Polar Surface Area (TPSA) 102.00 Ų
XlogP 0.00
Atomic LogP (AlogP) 2.91
H-Bond Acceptor 5
H-Bond Donor 5
Rotatable Bonds 1

Synonyms

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13306-05-3
cyanidin cation
2-(3,4-dihydroxyphenyl)chromenylium-3,5,7-triol
3,5,7,3',4'-Pentahydroxyflavylium
Flavylium, 3,3',4',5,7-pentahydroxy-
CHEMBL404515
2-(3,4-Dihydroxyphenyl)-3,5,7-trihydroxy-1-Benzopyrylium
UNII-7732ZHU564
CHEBI:27843
3,3',4',5,7-pentahydroxyflavylium
There are more than 10 synonyms. If you wish to see them all click here.

2D Structure

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2D Structure of Cyanidin

3D Structure

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ADMET Properties (via admetSAR 2)

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Target Value Probability (raw) Probability (%)
Human Intestinal Absorption + 0.6814 68.14%
Caco-2 - 0.7137 71.37%
Blood Brain Barrier - 0.6750 67.50%
Human oral bioavailability - 0.5714 57.14%
Subcellular localzation Nucleus 0.5152 51.52%
OATP2B1 inhibitior + 0.5063 50.63%
OATP1B1 inhibitior + 0.9552 95.52%
OATP1B3 inhibitior + 0.9589 95.89%
MATE1 inhibitior - 0.8000 80.00%
OCT2 inhibitior - 0.9250 92.50%
BSEP inhibitior - 0.7317 73.17%
P-glycoprotein inhibitior - 0.9012 90.12%
P-glycoprotein substrate - 0.9234 92.34%
CYP3A4 substrate - 0.5810 58.10%
CYP2C9 substrate - 1.0000 100.00%
CYP2D6 substrate - 0.7444 74.44%
CYP3A4 inhibition - 0.5630 56.30%
CYP2C9 inhibition - 0.5711 57.11%
CYP2C19 inhibition - 0.8312 83.12%
CYP2D6 inhibition - 0.8932 89.32%
CYP1A2 inhibition + 0.7858 78.58%
CYP2C8 inhibition + 0.7307 73.07%
CYP inhibitory promiscuity + 0.5837 58.37%
UGT catelyzed + 0.7000 70.00%
Carcinogenicity (binary) - 0.9800 98.00%
Carcinogenicity (trinary) Non-required 0.6160 61.60%
Eye corrosion - 0.9869 98.69%
Eye irritation + 0.9811 98.11%
Skin irritation + 0.5094 50.94%
Skin corrosion - 0.9062 90.62%
Ames mutagenesis + 0.5100 51.00%
Human Ether-a-go-go-Related Gene inhibition - 0.7704 77.04%
Micronuclear + 0.8500 85.00%
Hepatotoxicity - 0.6375 63.75%
skin sensitisation - 0.7631 76.31%
Respiratory toxicity + 0.6222 62.22%
Reproductive toxicity + 0.7000 70.00%
Mitochondrial toxicity + 0.6250 62.50%
Nephrotoxicity + 0.4676 46.76%
Acute Oral Toxicity (c) II 0.5939 59.39%
Estrogen receptor binding + 0.8889 88.89%
Androgen receptor binding + 0.8388 83.88%
Thyroid receptor binding + 0.7551 75.51%
Glucocorticoid receptor binding + 0.8984 89.84%
Aromatase binding + 0.9134 91.34%
PPAR gamma + 0.9054 90.54%
Honey bee toxicity - 0.8684 86.84%
Biodegradation - 0.8250 82.50%
Crustacea aquatic toxicity + 0.6700 67.00%
Fish aquatic toxicity + 0.8832 88.32%

Targets

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Proven Targets:

CHEMBL ID UniProt ID Name Min activity Assay type Source
CHEMBL2808 Q13133 LXR-alpha 3500 nM
EC50
PMID: 23769638
CHEMBL4660 P28907 Lymphocyte differentiation antigen CD38 21800 nM
IC50
PMID: 21641214
CHEMBL204 P00734 Thrombin 250 nM
7.79 nM
IC50
Kd
PMID: 24610996
via Super-PRED

Predicted Targets (via Super-PRED):

CHEMBL ID UniProt ID Name Probability Model accuracy
CHEMBL1929 P47989 Xanthine dehydrogenase 98.19% 96.12%
CHEMBL5619 P27695 DNA-(apurinic or apyrimidinic site) lyase 97.01% 91.11%
CHEMBL1951 P21397 Monoamine oxidase A 95.88% 91.49%
CHEMBL1860 P10827 Thyroid hormone receptor alpha 94.86% 99.15%
CHEMBL215 P09917 Arachidonate 5-lipoxygenase 90.84% 92.68%
CHEMBL242 Q92731 Estrogen receptor beta 88.14% 98.35%
CHEMBL2581 P07339 Cathepsin D 85.61% 98.95%
CHEMBL1806 P11388 DNA topoisomerase II alpha 84.99% 89.00%
CHEMBL3194 P02766 Transthyretin 83.35% 90.71%
CHEMBL5697 Q9GZT9 Egl nine homolog 1 82.13% 93.40%
CHEMBL3830 Q2M2I8 Adaptor-associated kinase 81.63% 83.10%

Plants that contains it

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Below are displayed all the plants proven (via scientific papers) to contain this compound!
To see more specific details click the taxa you are interested in.
Abutilon theophrasti
Aconitum leucostomum
Aframomum limbatum
Aglaia elaeagnoidea
Aiouea montana
Andrographis paniculata
Aquilegia ecalcarata
Aristolochia littoralis
Aristolochia zollingeriana
Artemisia szowitziana
Astragalus gummifer
Balanophora involucrata
Bartramia pomiformis
Beilschmiedia anacardioides
Betula ermanii
Blumea axillaris
Cardiospermum halicacabum
Ceanothus velutinus
Cedrus libani
Centaurea nigrescens
Cephalaria kotschyi
Cerinthe minor
Chlorophytum borivilianum
Cichorium intybus
Cichorium pumilum
Cirsium japonicum
Coreopsis fasciculata
Cornus alba
Craspidospermum verticillatum
Crataegus monogyna
Crepis foetida
Crescentia cujete
Crinum viviparum
Cuphea carthagenensis
Cyperus congestus
Dioscorea japonica
Dioscoreophyllum cumminsii
Diospyros kaki
Dipterocarpus dyeri
Dorstenia lindeniana
Ehretia dicksonii
Erigeron canadensis
Euphorbia segetalis
Fragaria vesca
Gamblea innovans
Garcinia celebica
Garcinia scortechinii
Gardenia tubifera
Ginkgo biloba
Glycine max
Hamamelis virginiana
Hypericum ascyron
Ipomoea cairica
Isodon lophanthoides
Ixeris stolonifera
Jacobaea renardii
Khaya ivorensis
Khaya senegalensis
Kopsia grandifolia
Larix gmelinii var. gmelinii
Lasianthus fordii
Ledebouria socialis
Lotus japonicus
Lotus polyphyllos
Lupinus verbasciformis
Lycopus europaeus
Matthiola incana
Melaleuca rhaphiophylla
Ozoroa insignis
Parastrephia lepidophylla
Penstemon secundiflorus
Penstemon serrulatus
Perilla frutescens
Persea barbujana
Petunia exserta
Phaseolus vulgaris
Phedimus kamtschaticus
Phlogacanthus thyrsiformis
Phytolacca acinosa
Pinus brutia
Piper arboreum
Pouzolzia occidentalis
Punica granatum
Rhododendron ponticum
Rosa spinosissima
Rubus idaeus
Ruta microcarpa
Salix babylonica
Salix purpurea
Selinum carvifolium
Senna siamea
Sextonia rubra
Sidastrum multiflorum
Syncolostemon parviflorus
Thalictrum filamentosum
Thuja plicata
Triaenophora rupestris
Triglochin maritima
Urtica triangularis
Vaccinium macrocarpon
Vaccinium myrtillus
Viburnum lantana
Vicia faba
Virola multinervia
Zanthoxylum schreberi

Cross-Links

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PubChem 128861
NPASS NPC46274
ChEMBL CHEMBL404515
LOTUS LTS0077168
wikiData Q417606