Scopolin

Details

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Internal ID 11f3fde8-4419-486b-805d-d3621433cc69
Taxonomy Phenylpropanoids and polyketides > Coumarins and derivatives > Coumarin glycosides
IUPAC Name 6-methoxy-7-[(2S,3R,4S,5S,6R)-3,4,5-trihydroxy-6-(hydroxymethyl)oxan-2-yl]oxychromen-2-one
SMILES (Canonical) COC1=C(C=C2C(=C1)C=CC(=O)O2)OC3C(C(C(C(O3)CO)O)O)O
SMILES (Isomeric) COC1=C(C=C2C(=C1)C=CC(=O)O2)O[C@H]3[C@@H]([C@H]([C@@H]([C@H](O3)CO)O)O)O
InChI InChI=1S/C16H18O9/c1-22-9-4-7-2-3-12(18)23-8(7)5-10(9)24-16-15(21)14(20)13(19)11(6-17)25-16/h2-5,11,13-17,19-21H,6H2,1H3/t11-,13-,14+,15-,16-/m1/s1
InChI Key SGTCGCCQZOUMJJ-YMILTQATSA-N
Popularity 104 references in papers

Physical and Chemical Properties

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Molecular Formula C16H18O9
Molecular Weight 354.31 g/mol
Exact Mass 354.09508215 g/mol
Topological Polar Surface Area (TPSA) 135.00 Ų
XlogP -1.10
Atomic LogP (AlogP) -1.02
H-Bond Acceptor 9
H-Bond Donor 4
Rotatable Bonds 4

Synonyms

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531-44-2
Scopoloside
Murrayin
Scopoletin 7-glucoside
Scopoletin 7-O-Glucoside
UNII-1Y49270PY8
CHEBI:16065
7beta-D-Glucopyranosyloxy-6-methoxycumarin
1Y49270PY8
NSC 404560
There are more than 10 synonyms. If you wish to see them all click here.

2D Structure

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2D Structure of Scopolin

3D Structure

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ADMET Properties (via admetSAR 2)

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Target Value Probability (raw) Probability (%)
Human Intestinal Absorption - 0.5647 56.47%
Caco-2 - 0.8435 84.35%
Blood Brain Barrier - 0.8000 80.00%
Human oral bioavailability - 0.5714 57.14%
Subcellular localzation Mitochondria 0.5367 53.67%
OATP2B1 inhibitior - 0.8470 84.70%
OATP1B1 inhibitior + 0.8846 88.46%
OATP1B3 inhibitior + 0.9769 97.69%
MATE1 inhibitior - 0.9000 90.00%
OCT2 inhibitior - 0.8250 82.50%
BSEP inhibitior - 0.7156 71.56%
P-glycoprotein inhibitior - 0.8887 88.87%
P-glycoprotein substrate - 0.8168 81.68%
CYP3A4 substrate - 0.5201 52.01%
CYP2C9 substrate - 0.8306 83.06%
CYP2D6 substrate - 0.8491 84.91%
CYP3A4 inhibition - 0.9107 91.07%
CYP2C9 inhibition - 0.9346 93.46%
CYP2C19 inhibition - 0.9158 91.58%
CYP2D6 inhibition - 0.9306 93.06%
CYP1A2 inhibition - 0.8772 87.72%
CYP2C8 inhibition - 0.7234 72.34%
CYP inhibitory promiscuity - 0.8094 80.94%
UGT catelyzed - 0.5000 50.00%
Carcinogenicity (binary) - 1.0000 100.00%
Carcinogenicity (trinary) Non-required 0.6881 68.81%
Eye corrosion - 0.9890 98.90%
Eye irritation - 0.9405 94.05%
Skin irritation - 0.8111 81.11%
Skin corrosion - 0.9624 96.24%
Ames mutagenesis - 0.7400 74.00%
Human Ether-a-go-go-Related Gene inhibition - 0.5000 50.00%
Micronuclear + 0.6133 61.33%
Hepatotoxicity - 0.7476 74.76%
skin sensitisation - 0.9164 91.64%
Respiratory toxicity - 0.5556 55.56%
Reproductive toxicity + 0.7333 73.33%
Mitochondrial toxicity - 0.5750 57.50%
Nephrotoxicity - 0.7485 74.85%
Acute Oral Toxicity (c) III 0.7058 70.58%
Estrogen receptor binding + 0.5321 53.21%
Androgen receptor binding - 0.5304 53.04%
Thyroid receptor binding - 0.5953 59.53%
Glucocorticoid receptor binding + 0.6966 69.66%
Aromatase binding + 0.5820 58.20%
PPAR gamma - 0.5000 50.00%
Honey bee toxicity - 0.8771 87.71%
Biodegradation - 0.7000 70.00%
Crustacea aquatic toxicity - 0.6949 69.49%
Fish aquatic toxicity + 0.6492 64.92%

Targets

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Proven Targets:

CHEMBL ID UniProt ID Name Min activity Assay type Source
CHEMBL261 P00915 Carbonic anhydrase I 5930 nM
Ki
PMID: 22892213
CHEMBL3594 Q16790 Carbonic anhydrase IX 8720 nM
Ki
PMID: 22892213
CHEMBL2326 P43166 Carbonic anhydrase VII 9110 nM
Ki
PMID: 22892213
CHEMBL3242 O43570 Carbonic anhydrase XII 780 nM
780 nM
Ki
Ki
PMID: 22892213
via Super-PRED
CHEMBL3912 Q8N1Q1 Carbonic anhydrase XIII 8430 nM
Ki
PMID: 22892213

Predicted Targets (via Super-PRED):

CHEMBL ID UniProt ID Name Probability Model accuracy
CHEMBL220 P22303 Acetylcholinesterase 98.58% 94.45%
CHEMBL5619 P27695 DNA-(apurinic or apyrimidinic site) lyase 96.17% 91.11%
CHEMBL2635 P51452 Dual specificity protein phosphatase 3 93.88% 94.00%
CHEMBL2581 P07339 Cathepsin D 92.87% 98.95%
CHEMBL3251 P19838 Nuclear factor NF-kappa-B p105 subunit 92.06% 96.09%
CHEMBL3060 Q9Y345 Glycine transporter 2 87.73% 99.17%
CHEMBL1075094 Q16236 Nuclear factor erythroid 2-related factor 2 85.65% 96.00%
CHEMBL3108638 O15164 Transcription intermediary factor 1-alpha 85.06% 95.56%
CHEMBL1293249 Q13887 Kruppel-like factor 5 84.71% 86.33%
CHEMBL4261 Q16665 Hypoxia-inducible factor 1 alpha 84.67% 85.14%
CHEMBL3401 O75469 Pregnane X receptor 84.10% 94.73%
CHEMBL4306 P22460 Voltage-gated potassium channel subunit Kv1.5 82.81% 94.03%
CHEMBL4016 P42262 Glutamate receptor ionotropic, AMPA 2 82.62% 86.92%
CHEMBL225 P28335 Serotonin 2c (5-HT2c) receptor 80.03% 89.62%

Plants that contains it

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Below are displayed all the plants proven (via scientific papers) to contain this compound!
To see more specific details click the taxa you are interested in.
Acacia cambagei
Acer saccharum
Achillea biserrata
Achillea impatiens
Aconitum brevicalcaratum
Aesculus pavia
Ailanthus triphysa
Althaea officinalis
Ammodendron conollyi
Angelica dahurica
Aniba rosodora
Arabidopsis thaliana
Aralidium pinnatifidum
Arnica viscosa
Artemisia alba
Artemisia argyi
Artemisia capillaris
Artemisia gmelinii
Artemisia minor
Artemisia montana
Artemisia ordosica
Artemisia princeps
Artemisia suksdorfii
Aster alpinus
Astragalus brachycarpus
Astragalus onobrychis
Baccharis tricuneata
Baptisia tinctoria
Beaumontia grandiflora
Berberis crataegina
Berberis japonica
Bersama swinnyi
Blainvillea acmella
Bobgunnia madagascariensis
Boophone disticha
Bulbophyllum crabro
Calceolaria thyrsiflora
Calodendrum capense
Calophyllum thwaitesii
Catunaregam obovata
Catunaregam spinosa
Cephalanthus occidentalis
Chamaecyparis pisifera
Cirsium dipsacolepis
Cocculus diversifolius
Coptis trifolia
Corchorus olitorius
Crataegus pontica
Crinum kirkii
Croton caudatus
Cytisus scoparius
Dendrobium densiflorum
Dictamnus albus
Dioscorea gracillima
Diplolophium buchananii
Echinacea purpurea
Echinocystis lobata
Echium rubrum
Elaeocarpus fuscoides
Entada africana
Entada polystachya
Epimedium wushanense
Erigeron bonariensis
Erycibe obtusifolia
Erycibe schmidtii
Eucalyptus viminalis
Euphorbia resinifera
Eurycoma longifolia
Evolvulus alsinoides
Falconeria insignis
Felicia amelloides
Fraxinus chinensis subsp. rhynchophylla
Fumaria indica
Geigeria schinzii
Goniothalamus undulatus
Gymnospermium kiangnanensis
Haplophyllum acutifolium
Helenium quadridentatum
Helichrysum arenarium
Helichrysum sutherlandii
Heliomeris longifolia var. annua
Hemionitis marantae
Heptapleurum divaricatum
Hexasepalum teres
Hydrophyllum virginianum
Hymenodictyon floribundum
Hymenoxys ambigens var. floribunda
Hypericum triquetrifolium
Iberis sempervirens
Inulanthera dregeana
Inulanthera nuda
Ipomoea digitata
Ipomoea nil
Isodon gesneroides
Isodon japonicus
Isodon nervosus
Isodon xerophilus
Jacobaea adonidifolia
Kitagawia praeruptora
Knightia deplanchei
Lonicera macrantha
Lophocereus marginatus
Lycium barbarum
Lycium chinense
Macaranga tanarius
Machilus thunbergii
Mallotus rhamnifolius
Malva sylvestris
Mandragora officinarum
Manihot esculenta
Meconopsis horridula
Melaleuca decora
Mentzelia albescens
Mesembryanthemum emarcidum
Morus alba
Murraya paniculata
Nama johnstonii
Nemuaron vieillardii
Neonauclea sessilifolia
Nerium oleander
Olea europaea subsp. cuspidata
Ophryosporus charua
Oreomecon radicata
Oxera splendida
Pachycereus pringlei
Paramignya scandens
Phlomoides medicinalis
Physochlaina physaloides
Picea laxa
Plantago lanceolata
Plectranthus verticillatus
Podocarpus nivalis
Pontederia crassipes
Prosopis kuntzei
Pseuduvaria trimera
Pteris leptophylla
Pteris sinensis
Pteris spinescens
Ptilidium ciliare
Quassia undulata
Ripariosida hermaphrodita
Roemeria carica
Salsola laricifolia
Santolina oblongifolia
Saussurea cordifolia
Saussurea hieracioides
Scaphopetalum thonneri
Schisandra arisanensis
Schumanniophyton magnificum
Scopolia carniolica
Scopolia japonica
Scutellaria seleriana
Senecio polyodon
Senna sophera
Skimmia japonica
Solanum pimpinellifolium
Sophora davidii
Stenocereus thurberi
Stevia eupatoria
Styphnolobium japonicum
Tabebuia angustata
Teucrium pestalozzae
Tithonia rotundifolia
Trichotosia subsessilis
Trifolium apertum
Tripodanthus acutifolius
Veronica pectinata
Viburnum odoratissimum var. awabuki
Virola sebifera
Vitex limonifolia
Vitex negundo
Vitex pinnata
Weigela subsessilis

Cross-Links

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PubChem 439514
NPASS NPC96294
ChEMBL CHEMBL225024
LOTUS LTS0061811
wikiData Q15426984