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Dioscorea gracillima

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Table of Contents

Details
Description
Synonyms
Common Names
Subtypes (subspecies, varieties, subvarieties, forms)
Germination/Propagation
Distribution
Links to other databases
Genome
Scientific Literature
Phytochemical Profile
Biological Material
Contributors
Collections

Details Top

Internal ID UUID643ff75feb38e779408594
Scientific name Dioscorea gracillima
Authority Miq.
First published in Ann. Mus. Bot. Lugduno-Batavi 3: 160 (1867)

Description Top

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Synonyms Top

No known synonyms.

Common names Top

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Language Common/alternative name
Chinese 红山药
Chinese 纤细薯蓣

Subspecies (abbr. subsp./ssp.) Top

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Varieties (abbr. var.) Top

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Subvarieties (abbr. subvar.) Top

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Forms (abbr. f.) Top

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Germination/Propagation Top

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No germination or propagation data was added yet.

Distribution (via POWO/KEW) Top

Legend for the distribution data:
- Doubtful data
- Extinct
- Introduced
- Native
  • Asia-temperate
    • China
      • China South-central
      • China Southeast
    • Eastern Asia
      • Japan

Links to other databases Top

Suggest others/fix!
Database ID/link to page
World Flora Online wfo-0000390789
Tropicos 11000022
KEW urn:lsid:ipni.org:names:318019-1
The Plant List kew-240198
Open Tree Of Life 84734
NCBI Taxonomy 64699
IPNI 318019-1
iNaturalist 473364
GBIF 2754645
EOL 1121005
CMAUP NPO14297

Genomes (via NCBI) Top

No reference genome is available on NCBI yet. We are constantly monitoring for new data.

Scientific Literature Top

Below are displayed the latest 15 articles published in PMC (PubMed Central®) and other sources (DOI number only)!
If you wish to see all the related articles click here.
Title Authors Publication Released IDs
Low-coverage whole genome sequencing of eleven species/subspecies in Dioscorea sect. Stenophora (Dioscoreaceae): comparative plastome analyses, molecular markers development and phylogenetic inference Hu K, Sun XQ, Chen M, Lu RS Front Plant Sci 06-Jun-2023
PMCID:PMC10281252
doi:10.3389/fpls.2023.1196176
PMID:37346115
Natural Products Targeting the Mitochondria in Cancers Yang Y, He PY, Zhang Y, Li N Molecules 28-Dec-2020
PMCID:PMC7795732
doi:10.3390/molecules26010092
PMID:33379233
Saponins of Japanese Dioscoreaceae. IV Takeo Tsukamoto, Toshio Kawasaki Pharmaceutical Society of Japan 20-Apr-2017
doi:10.1248/YAKUSHI1947.74.10_1127
Furostanol bisglycosides corresponding to dioscin and gracillin. TOSHIO KAWASAKI, TETSUYA KOMORI, KAZUMOTO MIYAHARA, TOSHIHIRO NOHARA, ICHIRO HOSOKAWA, KUNIHIDE MIHASHI Pharmaceutical Society of Japan 08-Dec-2011
doi:10.1248/CPB.22.2164
Steroidal glycosides from the rhizomes of Dioscorea spongiosa. Yin J, Kouda K, Tezuka Y, Tran QL, Miyahara T, Chen Y, Kadota S J Nat Prod 01-May-2003
doi:10.1021/NP0205957
PMID:12762799

Phytochemical Profile Top

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Below are displayed the proven (via scientific papers) natural compounds!
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Name PubChem ID Canonical SMILES MW Found in Proof
> Benzenoids / Benzene and substituted derivatives / Benzoic acids and derivatives / Hydroxybenzoic acid derivatives
4-Hydroxybenzoic acid 135 Click to see C1=CC(=CC=C1C(=O)O)O 138.12 unknown via CMAUP database
> Benzenoids / Benzene and substituted derivatives / Benzoyl derivatives
4-Methylbenzaldehyde 7725 Click to see CC1=CC=C(C=C1)C=O 120.15 unknown via CMAUP database
> Benzenoids / Phenols / Methoxyphenols
2-Propenal, 3-(4-hydroxy-3-methoxyphenyl)- 9984 Click to see COC1=C(C=CC(=C1)C=CC=O)O 178.18 unknown via CMAUP database
> Lignans, neolignans and related compounds / Coumarinolignans
Cleomiscosin C 11464176 Click to see COC1=CC(=CC(=C1O)OC)C2C(OC3=C4C(=CC(=C3O2)OC)C=CC(=O)O4)CO 416.40 unknown via CMAUP database
> Lignans, neolignans and related compounds / Furanoid lignans
4-[(3S,3aS,6S,6aS)-6-(4-hydroxy-3,5-dimethoxy-phenyl)-1,3,3a,4,6,6a-hexahydrofuro[3,4-c]furan-3-yl]-2,6-dimethoxy-phenol 12309695 Click to see COC1=CC(=CC(=C1O)OC)C2C3COC(C3CO2)C4=CC(=C(C(=C4)OC)O)OC 418.40 unknown via CMAUP database
Syringaresinol, (+)- 443023 Click to see COC1=CC(=CC(=C1O)OC)C2C3COC(C3CO2)C4=CC(=C(C(=C4)OC)O)OC 418.40 unknown via CMAUP database
> Lipids and lipid-like molecules / Prenol lipids / Triterpenoids
(25S)-3beta-Acetoxyspirosta-5-ene 11798067 Click to see CC1CCC2(C(C3C(O2)CC4C3(CCC5C4CC=C6C5(CCC(C6)OC(=O)C)C)C)C)OC1 456.70 unknown via CMAUP database
[(1S,2S,4S,5'R,6R,7S,9S,12S,13R,16S)-5',7,9,13-tetramethylspiro[5-oxapentacyclo[10.8.0.02,9.04,8.013,18]icos-18-ene-6,2'-oxane]-16-yl] acetate 50989896 Click to see CC1CCC2(C(C3C(O2)CC4C3(CCC5C4CC=C6C5(CCC(C6)OC(=O)C)C)C)C)OC1 456.70 unknown via CMAUP database
22-epi-Yamogenin 53486205 Click to see CC1CCC2(C(C3C(O2)CC4C3(CCC5C4CC=C6C5(CCC(C6)O)C)C)C)OC1 414.60 unknown via CMAUP database
Yamogenin 441900 Click to see CC1CCC2(C(C3C(O2)CC4C3(CCC5C4CC=C6C5(CCC(C6)O)C)C)C)OC1 414.60 unknown via CMAUP database
> Lipids and lipid-like molecules / Steroids and steroid derivatives / Steroidal glycosides
(2R,3R,4S,5S,6R)-2-[4-[17-[(2R,3R,4R,5S,6R)-3,4-dihydroxy-5-[(2S,3R,4S,5R,6R)-5-hydroxy-6-(hydroxymethyl)-3,4-bis[[(2S,3R,4S,5S,6R)-3,4,5-trihydroxy-6-(hydroxymethyl)oxan-2-yl]oxy]oxan-2-yl]oxy-6-(hydroxymethyl)oxan-2-yl]oxy-6,19-dihydroxy-7,13,18-trimethyl-5-oxapentacyclo[10.8.0.02,9.04,8.013,18]icosan-6-yl]-2-methylbutoxy]-6-(hydroxymethyl)oxane-3,4,5-triol 11968860 Click to see CC1C2C3CCC4C(C3CC2OC1(CCC(C)COC5C(C(C(C(O5)CO)O)O)O)O)CC(C6(C4(CCCC6OC7C(C(C(C(O7)CO)OC8C(C(C(C(O8)CO)O)OC9C(C(C(C(O9)CO)O)O)O)OC1C(C(C(C(O1)CO)O)O)O)O)O)C)C)O 1261.40 unknown via CMAUP database
> Lipids and lipid-like molecules / Steroids and steroid derivatives / Steroidal glycosides / Steroidal saponins
(2R,3S,4R,5R,6S)-2-[(2S,3S,4R,5S,6S)-5-hydroxy-6-(hydroxymethyl)-2-[(1R,2R,4R,5'R,6S,7R,8S,9R,12R,13R,16S)-5',7,9,13-tetramethylspiro[5-oxapentacyclo[10.8.0.02,9.04,8.013,18]icos-18-ene-6,2'-oxane]-16-yl]oxy-4-[(2R,3S,4R,5R,6S)-3,4,5-trihydroxy-6-(hydroxymethyl)oxan-2-yl]oxyoxan-3-yl]oxy-6-methyloxane-3,4,5-triol 162939134 Click to see CC1CCC2(C(C3C(O2)CC4C3(CCC5C4CC=C6C5(CCC(C6)OC7C(C(C(C(O7)CO)O)OC8C(C(C(C(O8)CO)O)O)O)OC9C(C(C(C(O9)C)O)O)O)C)C)C)OC1 885.00 unknown https://doi.org/10.1021/NP0205957
(2R,3S,4R,5R,6S)-2-[(2S,3S,4R,5S,6S)-5-hydroxy-6-(hydroxymethyl)-2-[[(1S,2S,4S,6S,7S,8R,9R,12S,13S,16R)-6-hydroxy-7,9,13-trimethyl-6-[(3R)-3-methyl-4-[(2R,3S,4R,5R,6S)-3,4,5-trihydroxy-6-(hydroxymethyl)oxan-2-yl]oxybutyl]-5-oxapentacyclo[10.8.0.02,9.04,8.013,18]icos-18-en-16-yl]oxy]-4-[(2R,3S,4R,5R,6S)-3,4,5-trihydroxy-6-(hydroxymethyl)oxan-2-yl]oxyoxan-3-yl]oxy-6-methyloxane-3,4,5-triol 162887043 Click to see CC1C2C(CC3C2(CCC4C3CC=C5C4(CCC(C5)OC6C(C(C(C(O6)CO)O)OC7C(C(C(C(O7)CO)O)O)O)OC8C(C(C(C(O8)C)O)O)O)C)C)OC1(CCC(C)COC9C(C(C(C(O9)CO)O)O)O)O 1065.20 unknown https://doi.org/10.1021/NP0205957
(2R,3S,4S,5S,6R)-2-[(2R,3S,4S,5R,6R)-4-hydroxy-2-(hydroxymethyl)-6-[[(1S,2S,4S,6R,7S,8R,9S,12S,13R,16S)-6-hydroxy-7,9,13-trimethyl-6-[(3S)-3-methyl-4-[(2R,3R,4S,5S,6R)-3,4,5-trihydroxy-6-(hydroxymethyl)oxan-2-yl]oxybutyl]-5-oxapentacyclo[10.8.0.02,9.04,8.013,18]icos-18-en-16-yl]oxy]-5-[(2R,3S,4S,5S,6R)-3,4,5-trihydroxy-6-methyloxan-2-yl]oxyoxan-3-yl]oxy-6-methyloxane-3,4,5-triol 53384936 Click to see CC1C2C(CC3C2(CCC4C3CC=C5C4(CCC(C5)OC6C(C(C(C(O6)CO)OC7C(C(C(C(O7)C)O)O)O)O)OC8C(C(C(C(O8)C)O)O)O)C)C)OC1(CCC(C)COC9C(C(C(C(O9)CO)O)O)O)O 1049.20 unknown via CMAUP database
2-[5-hydroxy-6-(hydroxymethyl)-2-[[(1S,2S,4S,6R,7S,8R,9S,12S,13R,16S)-6-hydroxy-7,9,13-trimethyl-6-[(3R)-3-methyl-4-[3,4,5-trihydroxy-6-(hydroxymethyl)oxan-2-yl]oxybutyl]-5-oxapentacyclo[10.8.0.02,9.04,8.013,18]icos-18-en-16-yl]oxy]-4-[3,4,5-trihydroxy-6-(hydroxymethyl)oxan-2-yl]oxyoxan-3-yl]oxy-6-methyloxane-3,4,5-triol 54609052 Click to see CC1C2C(CC3C2(CCC4C3CC=C5C4(CCC(C5)OC6C(C(C(C(O6)CO)O)OC7C(C(C(C(O7)CO)O)O)O)OC8C(C(C(C(O8)C)O)O)O)C)C)OC1(CCC(C)COC9C(C(C(C(O9)CO)O)O)O)O 1065.20 unknown via CMAUP database
26-O-beta-D-glucopyranosyl-3beta,26-dihydroxy-23S-methoxy-25(R)-furosta-5,20(22)-dien-3-O-alpha-L-rhamnopyranosyl(1-2)-[alpha-L-rhamnopyranosyl(1-4)]-beta-D-glucopyranoside 52931427 Click to see CCC1C(CC2C1(CCC3C2CC=C4C3(CCC(C4)OC5C(C(C(C(O5)CO)OC6C(C(C(C(O6)C)O)O)O)O)OC7C(C(C(C(O7)C)O)O)O)C)C)OC(=C)C(CC(C)COC8C(C(C(C(O8)CO)O)O)O)OC 1077.30 unknown via CMAUP database
3-O-(Glcb1-3(Rhaa1-2)Glcb)-(25R)-spirost-5-en-3beta-ol 52931453 Click to see CCC1C(CC2C1(CCC3C2CC=C4C3(CCC(C4)OC5C(C(C(C(O5)CO)O)OC6C(C(C(C(O6)CO)O)O)O)OC7C(C(C(C(O7)C)O)O)O)C)C)OC8(CCC(CO8)C)C 901.10 unknown via CMAUP database
3-O-(Rhaa1-4(Rhaa1-2)Glcb)-(25R)-spirost-5-en-3beta-ol 52931449 Click to see CCC1C(CC2C1(CCC3C2CC=C4C3(CCC(C4)OC5C(C(C(C(O5)CO)OC6C(C(C(C(O6)C)O)O)O)O)OC7C(C(C(C(O7)C)O)O)O)C)C)OC8(CCC(CO8)C)C 885.10 unknown via CMAUP database
CID 496769 496769 Click to see CC1CCC2(C(C3C(O2)CC4C3(CCC5C4CC=C6C5(CCC(C6)OC7C(C(C(C(O7)CO)O)OC8C(C(C(C(O8)CO)O)O)O)OC9C(C(C(C(O9)C)O)O)O)C)C)C)OC1 885.00 unknown https://doi.org/10.1248/YAKUSHI1947.74.10_1127
Gracillin 159861 Click to see CC1CCC2(C(C3C(O2)CC4C3(CCC5C4CC=C6C5(CCC(C6)OC7C(C(C(C(O7)CO)O)OC8C(C(C(C(O8)CO)O)O)O)OC9C(C(C(C(O9)C)O)O)O)C)C)C)OC1 885.00 unknown https://doi.org/10.1248/YAKUSHI1947.74.10_1127
Protodioscin 441891 Click to see CC1C2C(CC3C2(CCC4C3CC=C5C4(CCC(C5)OC6C(C(C(C(O6)CO)OC7C(C(C(C(O7)C)O)O)O)O)OC8C(C(C(C(O8)C)O)O)O)C)C)OC1(CCC(C)COC9C(C(C(C(O9)CO)O)O)O)O 1049.20 unknown https://doi.org/10.1248/CPB.22.2164
Protoneogracillin 46906323 Click to see CC1C2C(CC3C2(CCC4C3CC=C5C4(CCC(C5)OC6C(C(C(C(O6)CO)O)OC7C(C(C(C(O7)CO)O)O)O)OC8C(C(C(C(O8)C)O)O)O)C)C)OC1(CCC(C)COC9C(C(C(C(O9)CO)O)O)O)O 1065.20 unknown via CMAUP database
> Lipids and lipid-like molecules / Steroids and steroid derivatives / Stigmastanes and derivatives
Beta-Sitosterol 222284 Click to see CCC(CCC(C)C1CCC2C1(CCC3C2CC=C4C3(CCC(C4)O)C)C)C(C)C 414.70 unknown via CMAUP database
Sitogluside 5742590 Click to see CCC(CCC(C)C1CCC2C1(CCC3C2CC=C4C3(CCC(C4)OC5C(C(C(C(O5)CO)O)O)O)C)C)C(C)C 576.80 unknown via CMAUP database
> Organic oxygen compounds / Organooxygen compounds / Carbohydrates and carbohydrate conjugates / Glycosyl compounds / Phenolic glycosides
Eleutheroside B 5316860 Click to see COC1=CC(=CC(=C1OC2C(C(C(C(O2)CO)O)O)O)OC)C=CCO 372.40 unknown via CMAUP database
> Organoheterocyclic compounds / Diazanaphthalenes / Benzodiazines / Quinazolines
Deoxyvasicinone 68261 Click to see C1CC2=NC3=CC=CC=C3C(=O)N2C1 186.21 unknown via CMAUP database
> Organoheterocyclic compounds / Indoles and derivatives / Indoles / 3-alkylindoles
N,N-Dimethyl-1H-indole-3-(methanaminium) 101928958 Click to see CN(C)CC1=C[NH2+]C2=CC=CC=C21 175.25 unknown via CMAUP database
> Phenylpropanoids and polyketides / Cinnamic acids and derivatives / Hydroxycinnamic acids and derivatives / Coumaric acids and derivatives
2-Propenoic acid, 3-(3,4-dihydroxyphenyl)-, ethyl ester 66883 Click to see CCOC(=O)C=CC1=CC(=C(C=C1)O)O 208.21 unknown via CMAUP database
> Phenylpropanoids and polyketides / Cinnamic acids and derivatives / Hydroxycinnamic acids and derivatives / Hydroxycinnamic acids
(E)-3-(3,4-dihydroxyphenyl)prop-2-enoic acid 2518 Click to see C1=CC(=C(C=C1C=CC(=O)O)O)O 180.16 unknown via CMAUP database
3-(3-Hydroxy-4-methoxy-phenyl)-acrylic acid 92126 Click to see COC1=C(C=C(C=C1)C=CC(=O)O)O 194.18 unknown via CMAUP database
> Phenylpropanoids and polyketides / Coumarins and derivatives / Coumarin glycosides
6,7-dimethoxy-8-[(2S,3R,4S,5S,6R)-3,4,5-trihydroxy-6-(hydroxymethyl)oxan-2-yl]oxychromen-2-one 21633144 Click to see COC1=C(C(=C2C(=C1)C=CC(=O)O2)OC3C(C(C(C(O3)CO)O)O)O)OC 384.30 unknown via CMAUP database
Calycanthoside 5318566 Click to see COC1=C(C(=C2C(=C1)C=CC(=O)O2)OC)OC3C(C(C(C(O3)CO)O)O)O 384.30 unknown via CMAUP database
Mandshurin 11740722 Click to see COC1=C(C(=C2C=CC(=O)OC2=C1)OC)OC3C(C(C(C(O3)CO)O)O)O 384.30 unknown via CMAUP database
Scopolin 439514 Click to see COC1=C(C=C2C(=C1)C=CC(=O)O2)OC3C(C(C(C(O3)CO)O)O)O 354.31 unknown via CMAUP database
> Phenylpropanoids and polyketides / Coumarins and derivatives / Hydroxycoumarins
Arteminorin B 44178671 Click to see COC1=C(C=C2C(=C1)C=CC(=O)O2)OC3=C(C=C4C=C(C(=O)OC4=C3OC)O)OC 412.30 unknown via CMAUP database
Fraxidin 3083616 Click to see COC1=C(C(=C2C(=C1)C=CC(=O)O2)O)OC 222.19 unknown via CMAUP database
> Phenylpropanoids and polyketides / Coumarins and derivatives / Hydroxycoumarins / 6,7-dihydroxycoumarins
arteminorin C 44178672 Click to see COC1=C(C(=C2C(=C1)C=C(C(=O)O2)C3=CC4=CC(=C(C=C4OC3=O)O)O)OC)O 398.30 unknown via CMAUP database
> Phenylpropanoids and polyketides / Coumarins and derivatives / Hydroxycoumarins / 7-hydroxycoumarins
Arteminorin A 44178670 Click to see COC1=C(C(=C2C(=C1)C=CC(=O)O2)OC)OC3=CC4=CC(=C(C(=C4OC3=O)OC)O)OC 442.40 unknown via CMAUP database
Isofraxidin 5318565 Click to see COC1=C(C(=C2C(=C1)C=CC(=O)O2)OC)O 222.19 unknown via CMAUP database
Scopoletin 5280460 Click to see COC1=C(C=C2C(=C1)C=CC(=O)O2)O 192.17 unknown via CMAUP database
Umbelliferone 5281426 Click to see C1=CC(=CC2=C1C=CC(=O)O2)O 162.14 unknown via CMAUP database
> Phenylpropanoids and polyketides / Flavonoids / Flavones
Apigenin 5280443 Click to see C1=CC(=CC=C1C2=CC(=O)C3=C(C=C(C=C3O2)O)O)O 270.24 unknown via CMAUP database
Luteolin 5280445 Click to see C1=CC(=C(C=C1C2=CC(=O)C3=C(C=C(C=C3O2)O)O)O)O 286.24 unknown via CMAUP database
> Phenylpropanoids and polyketides / Flavonoids / O-methylated flavonoids / 3-O-methylated flavonoids
Chryseriol 5280666 Click to see COC1=C(C=CC(=C1)C2=CC(=O)C3=C(C=C(C=C3O2)O)O)O 300.26 unknown via CMAUP database
Tricin 5281702 Click to see COC1=CC(=CC(=C1O)OC)C2=CC(=O)C3=C(C=C(C=C3O2)O)O 330.29 unknown via CMAUP database
> Phenylpropanoids and polyketides / Flavonoids / O-methylated flavonoids / 4-O-methylated flavonoids
Acacetin 5280442 Click to see COC1=CC=C(C=C1)C2=CC(=O)C3=C(C=C(C=C3O2)O)O 284.26 unknown via CMAUP database
> Phenylpropanoids and polyketides / Flavonoids / O-methylated flavonoids / 6-O-methylated flavonoids
Santin 5281695 Click to see COC1=CC=C(C=C1)C2=C(C(=O)C3=C(O2)C=C(C(=C3O)OC)O)OC 344.30 unknown via CMAUP database
> Phenylpropanoids and polyketides / Flavonoids / O-methylated flavonoids / 7-O-methylated flavonoids
5,8-Dihydroxy-7,4'-dimethoxyflavone 15289454 Click to see COC1=CC=C(C=C1)C2=CC(=O)C3=C(O2)C(=C(C=C3O)OC)O 314.29 unknown via CMAUP database
> Phenylpropanoids and polyketides / Isoflavonoids / Isoflav-2-enes / Isoflavones
Tectorigenin 5281811 Click to see COC1=C(C2=C(C=C1O)OC=C(C2=O)C3=CC=C(C=C3)O)O 300.26 unknown via CMAUP database

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