Procyanidin C1

Details

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Internal ID f1bf7863-2a43-4089-9101-f8f629a0c40d
Taxonomy Phenylpropanoids and polyketides > Flavonoids > Biflavonoids and polyflavonoids
IUPAC Name (2R,3R,4S)-2-(3,4-dihydroxyphenyl)-4-[(2R,3R)-2-(3,4-dihydroxyphenyl)-3,5,7-trihydroxy-3,4-dihydro-2H-chromen-8-yl]-8-[(2R,3R,4R)-2-(3,4-dihydroxyphenyl)-3,5,7-trihydroxy-3,4-dihydro-2H-chromen-4-yl]-3,4-dihydro-2H-chromene-3,5,7-triol
SMILES (Canonical) C1C(C(OC2=C1C(=CC(=C2C3C(C(OC4=C(C(=CC(=C34)O)O)C5C(C(OC6=CC(=CC(=C56)O)O)C7=CC(=C(C=C7)O)O)O)C8=CC(=C(C=C8)O)O)O)O)O)C9=CC(=C(C=C9)O)O)O
SMILES (Isomeric) C1[C@H]([C@H](OC2=C1C(=CC(=C2[C@@H]3[C@H]([C@H](OC4=C(C(=CC(=C34)O)O)[C@@H]5[C@H]([C@H](OC6=CC(=CC(=C56)O)O)C7=CC(=C(C=C7)O)O)O)C8=CC(=C(C=C8)O)O)O)O)O)C9=CC(=C(C=C9)O)O)O
InChI InChI=1S/C45H38O18/c46-18-10-27(54)33-32(11-18)61-42(16-2-5-21(48)25(52)8-16)39(59)37(33)35-29(56)14-30(57)36-38(40(60)43(63-45(35)36)17-3-6-22(49)26(53)9-17)34-28(55)13-23(50)19-12-31(58)41(62-44(19)34)15-1-4-20(47)24(51)7-15/h1-11,13-14,31,37-43,46-60H,12H2/t31-,37-,38+,39-,40-,41-,42-,43-/m1/s1
InChI Key MOJZMWJRUKIQGL-XILRTYJMSA-N
Popularity 117 references in papers

Physical and Chemical Properties

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Molecular Formula C45H38O18
Molecular Weight 866.80 g/mol
Exact Mass 866.20581436 g/mol
Topological Polar Surface Area (TPSA) 331.00 Ų
XlogP 3.30
Atomic LogP (AlogP) 4.44
H-Bond Acceptor 18
H-Bond Donor 15
Rotatable Bonds 5

Synonyms

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37064-30-5
Procyanidol C1
Proanthocyanidin C1
Cinnamtannin A1
Procyanidin C-1
(2R,2'R,2''R,3R,3'R,3''R,4R,4'S)-2,2',2''-Tris(3,4-dihydroxyphenyl)-[4,8':4',8''-terchroman]-3,3',3'',5,5',5'',7,7',7''-nonaol
UNII-33516LCW4F
CHEBI:75643
Procyanidin trimer C1
33516LCW4F
There are more than 10 synonyms. If you wish to see them all click here.

2D Structure

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2D Structure of Procyanidin C1

3D Structure

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ADMET Properties (via admetSAR 2)

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Target Value Probability (raw) Probability (%)
Human Intestinal Absorption + 0.8698 86.98%
Caco-2 - 0.8992 89.92%
Blood Brain Barrier - 0.7000 70.00%
Human oral bioavailability - 0.7857 78.57%
Subcellular localzation Mitochondria 0.4793 47.93%
OATP2B1 inhibitior - 0.7086 70.86%
OATP1B1 inhibitior + 0.9422 94.22%
OATP1B3 inhibitior + 0.9459 94.59%
MATE1 inhibitior - 0.9600 96.00%
OCT2 inhibitior - 0.8750 87.50%
BSEP inhibitior + 0.8302 83.02%
P-glycoprotein inhibitior + 0.6925 69.25%
P-glycoprotein substrate - 0.7908 79.08%
CYP3A4 substrate + 0.5813 58.13%
CYP2C9 substrate - 0.5994 59.94%
CYP2D6 substrate + 0.5264 52.64%
CYP3A4 inhibition - 0.8309 83.09%
CYP2C9 inhibition - 0.9071 90.71%
CYP2C19 inhibition - 0.9026 90.26%
CYP2D6 inhibition - 0.9231 92.31%
CYP1A2 inhibition - 0.9155 91.55%
CYP2C8 inhibition + 0.6873 68.73%
CYP inhibitory promiscuity - 0.8625 86.25%
UGT catelyzed + 0.7000 70.00%
Carcinogenicity (binary) - 0.9800 98.00%
Carcinogenicity (trinary) Non-required 0.6139 61.39%
Eye corrosion - 0.9904 99.04%
Eye irritation - 0.8858 88.58%
Skin irritation - 0.6044 60.44%
Skin corrosion - 0.9317 93.17%
Ames mutagenesis + 0.6700 67.00%
Human Ether-a-go-go-Related Gene inhibition + 0.8766 87.66%
Micronuclear + 0.7859 78.59%
Hepatotoxicity - 0.7375 73.75%
skin sensitisation - 0.7665 76.65%
Respiratory toxicity + 0.6000 60.00%
Reproductive toxicity + 0.8000 80.00%
Mitochondrial toxicity + 0.6000 60.00%
Nephrotoxicity - 0.5806 58.06%
Acute Oral Toxicity (c) IV 0.5696 56.96%
Estrogen receptor binding + 0.7764 77.64%
Androgen receptor binding + 0.7454 74.54%
Thyroid receptor binding + 0.6035 60.35%
Glucocorticoid receptor binding - 0.4898 48.98%
Aromatase binding - 0.5000 50.00%
PPAR gamma + 0.7277 72.77%
Honey bee toxicity - 0.7708 77.08%
Biodegradation - 0.8250 82.50%
Crustacea aquatic toxicity + 0.5500 55.00%
Fish aquatic toxicity + 0.6855 68.55%

Targets

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Proven Targets:

CHEMBL ID UniProt ID Name Min activity Assay type Source
CHEMBL333 P08253 Matrix metalloproteinase-2 31400 nM
IC50
PMID: 20053563

Predicted Targets (via Super-PRED):

CHEMBL ID UniProt ID Name Probability Model accuracy
CHEMBL5619 P27695 DNA-(apurinic or apyrimidinic site) lyase 99.52% 91.11%
CHEMBL4040 P28482 MAP kinase ERK2 99.15% 83.82%
CHEMBL1951 P21397 Monoamine oxidase A 96.88% 91.49%
CHEMBL3251 P19838 Nuclear factor NF-kappa-B p105 subunit 94.80% 96.09%
CHEMBL1929 P47989 Xanthine dehydrogenase 93.59% 96.12%
CHEMBL3137262 O60341 LSD1/CoREST complex 92.66% 97.09%
CHEMBL1806 P11388 DNA topoisomerase II alpha 89.86% 89.00%
CHEMBL1860 P10827 Thyroid hormone receptor alpha 88.73% 99.15%
CHEMBL2535 P11166 Glucose transporter 86.62% 98.75%
CHEMBL3108638 O15164 Transcription intermediary factor 1-alpha 86.17% 95.56%
CHEMBL4208 P20618 Proteasome component C5 84.92% 90.00%
CHEMBL3401 O75469 Pregnane X receptor 84.40% 94.73%
CHEMBL3194 P02766 Transthyretin 83.39% 90.71%
CHEMBL236 P41143 Delta opioid receptor 82.54% 99.35%
CHEMBL4203 Q9HAZ1 Dual specificity protein kinase CLK4 81.46% 94.45%

Plants that contains it

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Below are displayed all the plants proven (via scientific papers) to contain this compound!
To see more specific details click the taxa you are interested in.
Acacia adunca
Aconitum liangshanicum
Aconitum sachalinense
Adiantum philippense
Aesculus hippocastanum
Ageratina gracilis
Albizia lebbeck
Aldama incana
Alstonia deplanchei
Annona cornifolia
Areca catechu
Artemisia pedemontana subsp. assoana
Asteriscus graveolens
Astragalus sempervirens
Baccharis megapotamica
Calluna vulgaris
Calostephane divaricata
Camellia reticulata
Camellia sinensis
Campylotropis hirtella
Caragana aurantiaca
Cecropia glaziovii
Centrosema pascuorum
Ceratozamia fuscoviridis
Chaenomeles sinensis
Cinchona pubescens
Cinnamomum aromaticum
Cinnamomum camphora
Cinnamomum verum
Citrus glauca
Coleogyne ramosissima
Crataegus laevigata
Crataegus monogyna
Crataegus pinnatifida
Crataegus sinaica
Critonia quadrangularis
Dioscorea cirrhosa
Dumortiera hirsuta
Echeveria secunda
Eriobotrya japonica
Eucalyptus melliodora
Fagopyrum acutatum
Ficus simplicissima
Flemingia macrophylla
Gnetum latifolium
Goniothalamus malayanus
Guazuma ulmifolia
Gynura bicolor
Haplophyllum dauricum
Hedysarum inundatum
Hypericum erectum
Hypericum laricifolium
Ipomoea digitata
Kandelia candel
Lepisorus ussuriensis
Lysimachia mauritiana
Malus pumila
Malus sylvestris
Marrubium anisodon
Marrubium supinum
Metalasia capitata
Musanga cecropioides
Naucleopsis ternstroemiiflora
Nelia pillansii
Neolitsea cassia
Ocotea pittieri
Orthosphenia mexicana
Oxyanthus speciosus
Pastinaca sativa
Paullinia cupana
Peltostigma guatemalense
Premna odorata
Prunus armeniaca
Prunus dulcis
Pseudotsuga menziesii
Quercus dentata
Rauvolfia vomitoria
Rheum tanguticum
Rhodanthe chlorocephala subsp. rosea
Rhynchopsidium pumilum
Rumex acetosa
Rumex maritimus
Salvia syriaca
Scutellaria amoena
Senecio latifolius
Senecio peripotamus
Solanum elaeagnifolium
Solanum laxum
Spatholobus suberectus
Stevia mercedensis
Strychnos tabascana
Styrax hookeri
Swertia franchetiana
Swinglea glutinosa
Theobroma cacao
Thuja standishii
Thujopsis dolabrata
Vaccinium oxycoccos
Verbesina rupestris
Vitis vinifera
Wikstroemia retusa
Zanthoxylum tetraspermum

Cross-Links

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PubChem 169853
NPASS NPC279406
ChEMBL CHEMBL290632
LOTUS LTS0260445
wikiData Q7247556