myricetin 3-O-beta-D-glucopyranoside

Details

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Internal ID c363ec8d-58e3-41bb-addc-9507b57cd072
Taxonomy Phenylpropanoids and polyketides > Flavonoids > Flavonoid glycosides > Flavonoid O-glycosides > Flavonoid-3-O-glycosides
IUPAC Name 5,7-dihydroxy-3-[(2S,3R,4S,5S,6R)-3,4,5-trihydroxy-6-(hydroxymethyl)oxan-2-yl]oxy-2-(3,4,5-trihydroxyphenyl)chromen-4-one
SMILES (Canonical) C1=C(C=C(C(=C1O)O)O)C2=C(C(=O)C3=C(C=C(C=C3O2)O)O)OC4C(C(C(C(O4)CO)O)O)O
SMILES (Isomeric) C1=C(C=C(C(=C1O)O)O)C2=C(C(=O)C3=C(C=C(C=C3O2)O)O)O[C@H]4[C@@H]([C@H]([C@@H]([C@H](O4)CO)O)O)O
InChI InChI=1S/C21H20O13/c22-5-12-15(28)17(30)18(31)21(33-12)34-20-16(29)13-8(24)3-7(23)4-11(13)32-19(20)6-1-9(25)14(27)10(26)2-6/h1-4,12,15,17-18,21-28,30-31H,5H2/t12-,15-,17+,18-,21+/m1/s1
InChI Key FOHXFLPXBUAOJM-LIBJPBHASA-N
Popularity 25 references in papers

Physical and Chemical Properties

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Molecular Formula C21H20O13
Molecular Weight 480.40 g/mol
Exact Mass 480.09039069 g/mol
Topological Polar Surface Area (TPSA) 227.00 Ų
XlogP 0.00
Atomic LogP (AlogP) -0.83
H-Bond Acceptor 13
H-Bond Donor 9
Rotatable Bonds 4

Synonyms

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myricetin 3-O-beta-D-glucopyranoside
Isomericitrin
CHEBI:75813
Myricetin 3-beta-glucoside
Myricetin 3-O-D-glucoside
myricetin 3-O-beta-D-glucoside
CHEMBL1221722
5,7-dihydroxy-3-[(2S,3R,4S,5S,6R)-3,4,5-trihydroxy-6-(hydroxymethyl)oxan-2-yl]oxy-2-(3,4,5-trihydroxyphenyl)chromen-4-one
Isomyricitrin
Myricetin 3-beta-D-glucopyranoside
There are more than 10 synonyms. If you wish to see them all click here.

2D Structure

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2D Structure of myricetin 3-O-beta-D-glucopyranoside

3D Structure

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ADMET Properties (via admetSAR 2)

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Target Value Probability (raw) Probability (%)
Human Intestinal Absorption - 0.5116 51.16%
Caco-2 - 0.9052 90.52%
Blood Brain Barrier - 0.7750 77.50%
Human oral bioavailability - 0.7429 74.29%
Subcellular localzation Mitochondria 0.6068 60.68%
OATP2B1 inhibitior + 0.5920 59.20%
OATP1B1 inhibitior + 0.8567 85.67%
OATP1B3 inhibitior + 0.9265 92.65%
MATE1 inhibitior - 0.7800 78.00%
OCT2 inhibitior - 0.7750 77.50%
BSEP inhibitior - 0.6924 69.24%
P-glycoprotein inhibitior - 0.6229 62.29%
P-glycoprotein substrate - 0.7677 76.77%
CYP3A4 substrate + 0.5937 59.37%
CYP2C9 substrate - 0.6709 67.09%
CYP2D6 substrate - 0.8582 85.82%
CYP3A4 inhibition - 0.9193 91.93%
CYP2C9 inhibition - 0.9296 92.96%
CYP2C19 inhibition - 0.9289 92.89%
CYP2D6 inhibition - 0.9513 95.13%
CYP1A2 inhibition - 0.9084 90.84%
CYP2C8 inhibition + 0.7905 79.05%
CYP inhibitory promiscuity - 0.7728 77.28%
UGT catelyzed + 0.7000 70.00%
Carcinogenicity (binary) - 1.0000 100.00%
Carcinogenicity (trinary) Non-required 0.7144 71.44%
Eye corrosion - 0.9930 99.30%
Eye irritation - 0.7450 74.50%
Skin irritation - 0.8036 80.36%
Skin corrosion - 0.9691 96.91%
Ames mutagenesis + 0.6200 62.00%
Human Ether-a-go-go-Related Gene inhibition - 0.4427 44.27%
Micronuclear + 0.6533 65.33%
Hepatotoxicity - 0.5250 52.50%
skin sensitisation - 0.9122 91.22%
Respiratory toxicity + 0.6222 62.22%
Reproductive toxicity + 0.7222 72.22%
Mitochondrial toxicity + 0.5125 51.25%
Nephrotoxicity - 0.8107 81.07%
Acute Oral Toxicity (c) III 0.4045 40.45%
Estrogen receptor binding + 0.7926 79.26%
Androgen receptor binding + 0.7137 71.37%
Thyroid receptor binding - 0.5205 52.05%
Glucocorticoid receptor binding + 0.6951 69.51%
Aromatase binding + 0.5552 55.52%
PPAR gamma + 0.6713 67.13%
Honey bee toxicity - 0.7933 79.33%
Biodegradation - 0.7250 72.50%
Crustacea aquatic toxicity - 0.6350 63.50%
Fish aquatic toxicity + 0.8218 82.18%

Targets

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Proven Targets:

CHEMBL ID UniProt ID Name Min activity Assay type Source
CHEMBL2409 P34913 Epoxide hydratase 17230 nM
IC50
PMID: 24679441

Predicted Targets (via Super-PRED):

CHEMBL ID UniProt ID Name Probability Model accuracy
CHEMBL5619 P27695 DNA-(apurinic or apyrimidinic site) lyase 99.73% 91.11%
CHEMBL1806 P11388 DNA topoisomerase II alpha 96.54% 89.00%
CHEMBL2345 P51812 Ribosomal protein S6 kinase alpha 3 96.15% 95.64%
CHEMBL2635 P51452 Dual specificity protein phosphatase 3 94.25% 94.00%
CHEMBL2581 P07339 Cathepsin D 93.15% 98.95%
CHEMBL3401 O75469 Pregnane X receptor 91.26% 94.73%
CHEMBL3060 Q9Y345 Glycine transporter 2 90.98% 99.17%
CHEMBL3194 P02766 Transthyretin 90.79% 90.71%
CHEMBL2424 Q04760 Glyoxalase I 88.16% 91.67%
CHEMBL1860 P10827 Thyroid hormone receptor alpha 88.09% 99.15%
CHEMBL1293249 Q13887 Kruppel-like factor 5 86.04% 86.33%
CHEMBL3108638 O15164 Transcription intermediary factor 1-alpha 84.22% 95.56%
CHEMBL3251 P19838 Nuclear factor NF-kappa-B p105 subunit 84.21% 96.09%
CHEMBL3137262 O60341 LSD1/CoREST complex 83.09% 97.09%
CHEMBL1075162 Q13304 Uracil nucleotide/cysteinyl leukotriene receptor 81.48% 80.33%
CHEMBL4203 Q9HAZ1 Dual specificity protein kinase CLK4 80.41% 94.45%

Plants that contains it

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Below are displayed all the plants proven (via scientific papers) to contain this compound!
To see more specific details click the taxa you are interested in.
Acacia latifolia
Acacia mearnsii
Acer glabrum
Aconitum violaceum
Ajuga genevensis
Alkanna cappadocica
Amaranthus hypochondriacus
Artemisia rupestris subsp. rupestris
Astilbe thunbergii
Atalantia racemosa
Berberis repens
Betula pendula
Betula pubescens
Betula schmidtii
Boronia pinnata
Bridelia ferruginea
Buddleja cordata
Bunias orientalis
Calocedrus decurrens
Camellia sinensis
Centaurea virgata subsp. squarrosa
Cephalotus follicularis
Cistus ladanifer
Cistus laurifolius
Cleistanthus indochinensis
Cleome spinosa
Clitoria ternatea
Codonopsis pilosula
Combretum micranthum
Crambe tatarica
Crossopteryx febrifuga
Croton laccifer
Cyrtomium falcatum
Delphinium shawurense
Dioscorea bulbifera
Diospyros eriantha
Diplusodon speciosus
Elegia microcarpa
Elymus repens
Embelia keniensis
Epilobium hirsutum
Erythroxylum rufum
Euphorbia humifusa
Euphorbia myrsinites
Fagraea gracilipes
Fritillaria monantha
Garcinia xipshuanbannaensis
Globularia davisiana
Glochidion sphaerogynum
Guiera senegalensis
Gutierrezia microcephala
Helichrysum graveolens
Helicteres angustifolia
Hippeastrum papilio
Hoffmannia strigillosa
Humulus lupulus
Hypericum richeri
Iryanthera paraensis
Lathyrus nissolia
Leonurus persicus
Limnocharis flava
Limonium aureum
Litsea rotundifolia
Loropetalum chinense
Lotus dorycnium
Lycopodium thyoides
Maesa lanceolata
Magnolia sieboldii
Melaleuca quinquenervia
Millettia erythrocalyx
Millettia ferruginea
Myrsine africana
Myrsine lancifolia
Myrtus communis
Nekemias grossedentata
Norantea guianensis
Oenothera glaucifolia
Ononis vaginalis
Pelargonium reniforme
Peltogyne floribunda
Phedimus aizoon
Phedimus kamtschaticus
Phyllolobium chinense
Picea abies
Pinguicula vulgaris
Pongamiopsis pervilleana
Prosopis farcta
Prosopis reptans
Pteris semipinnata
Raoulia glabra
Ratibida mexicana
Rhus coriaria
Ribes nigrum
Ribes viscosissimum
Salvia hispanica
Saxifraga tricuspidata
Scorzonera pseudodivaricata
Sedum litoreum
Semialarium mexicanum
Senecio viscosus
Stenocereus griseus
Syncarpia hillii
Tagetes elliptica
Tagetes mandonii
Teucrium asiaticum
Thermopsis dolichocarpa
Trichosanthes rosthornii
Trifolium repens
Vaccinium macrocarpon
Vicia amurensis
Vitis vinifera
Wyethia mollis
Xylonagra arborea
Zanthoxylum americanum

Cross-Links

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PubChem 5318606
NPASS NPC240431
ChEMBL CHEMBL1221722
LOTUS LTS0113279
wikiData Q27145562