Bicyclogermacrene

Details

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Internal ID 26a34097-8212-47f7-afbc-1357d642f7a7
Taxonomy Lipids and lipid-like molecules > Prenol lipids > Sesquiterpenoids > Bicyclogermacrane and isolepidozane sesquiterpenoids
IUPAC Name (2E,6E)-3,7,11,11-tetramethylbicyclo[8.1.0]undeca-2,6-diene
SMILES (Canonical) CC1=CCCC(=CC2C(C2(C)C)CC1)C
SMILES (Isomeric) C/C/1=C\CC/C(=C/C2C(C2(C)C)CC1)/C
InChI InChI=1S/C15H24/c1-11-6-5-7-12(2)10-14-13(9-8-11)15(14,3)4/h6,10,13-14H,5,7-9H2,1-4H3/b11-6+,12-10+
InChI Key VPDZRSSKICPUEY-BFPRWLMKSA-N
Popularity 1 reference in papers

Physical and Chemical Properties

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Molecular Formula C15H24
Molecular Weight 204.35 g/mol
Exact Mass 204.187800766 g/mol
Topological Polar Surface Area (TPSA) 0.00 Ų
XlogP 4.10
Atomic LogP (AlogP) 4.73
H-Bond Acceptor 0
H-Bond Donor 0
Rotatable Bonds 0

Synonyms

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(+)-bicyclogermacrene
.beta.-Cyclogermacrane
(1S,2E,6E,10R)-3,7,11,11-tetramethylbicyclo[8.1.0]undeca-2,6-diene
VPDZRSSKICPUEY-BFPRWLMKSA-N
VPDZRSSKICPUEY-QVIJUPDLSA-N
3,7,11,11-Tetramethylbicyclo[8.1.0]undeca-2,6-diene
3,7,11,11-Tetramethylbicyclo[8.1.0]undeca-2,6-diene #
Bicyclo[8.1.0]undeca-2,6-diene, 3,7,11,11-tetramethyl-, (1S,2E,6E,10R)-
Bicyclo[8.1.0]undeca-2,6-diene, 3,7,11,11-tetramethyl-, (E,E)-(1S,10R)-(+)-

2D Structure

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2D Structure of Bicyclogermacrene

3D Structure

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ADMET Properties (via admetSAR 2)

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Target Value Probability (raw) Probability (%)
Human Intestinal Absorption + 0.9909 99.09%
Caco-2 + 0.9591 95.91%
Blood Brain Barrier + 0.9750 97.50%
Human oral bioavailability + 0.6714 67.14%
Subcellular localzation Lysosomes 0.6555 65.55%
OATP2B1 inhibitior - 0.8512 85.12%
OATP1B1 inhibitior + 0.9667 96.67%
OATP1B3 inhibitior + 0.9624 96.24%
MATE1 inhibitior - 0.9400 94.00%
OCT2 inhibitior - 0.6750 67.50%
BSEP inhibitior - 0.7698 76.98%
P-glycoprotein inhibitior - 0.8739 87.39%
P-glycoprotein substrate - 0.9468 94.68%
CYP3A4 substrate + 0.5121 51.21%
CYP2C9 substrate - 0.7890 78.90%
CYP2D6 substrate - 0.7441 74.41%
CYP3A4 inhibition - 0.8991 89.91%
CYP2C9 inhibition - 0.6993 69.93%
CYP2C19 inhibition - 0.6402 64.02%
CYP2D6 inhibition - 0.9299 92.99%
CYP1A2 inhibition - 0.6910 69.10%
CYP2C8 inhibition - 0.7429 74.29%
CYP inhibitory promiscuity - 0.7842 78.42%
UGT catelyzed - 0.0000 0.00%
Carcinogenicity (binary) - 0.6700 67.00%
Carcinogenicity (trinary) Warning 0.4661 46.61%
Eye corrosion - 0.8501 85.01%
Eye irritation - 0.6429 64.29%
Skin irritation + 0.6803 68.03%
Skin corrosion - 0.9651 96.51%
Ames mutagenesis - 0.9100 91.00%
Human Ether-a-go-go-Related Gene inhibition + 0.6749 67.49%
Micronuclear - 0.8900 89.00%
Hepatotoxicity + 0.5250 52.50%
skin sensitisation + 0.8733 87.33%
Respiratory toxicity - 0.5222 52.22%
Reproductive toxicity - 0.7667 76.67%
Mitochondrial toxicity + 0.5750 57.50%
Nephrotoxicity + 0.4685 46.85%
Acute Oral Toxicity (c) III 0.7166 71.66%
Estrogen receptor binding - 0.8949 89.49%
Androgen receptor binding - 0.6548 65.48%
Thyroid receptor binding - 0.7400 74.00%
Glucocorticoid receptor binding - 0.6488 64.88%
Aromatase binding - 0.7594 75.94%
PPAR gamma - 0.8018 80.18%
Honey bee toxicity - 0.8746 87.46%
Biodegradation - 0.5250 52.50%
Crustacea aquatic toxicity + 0.7600 76.00%
Fish aquatic toxicity + 0.9941 99.41%

Targets

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Proven Targets:

CHEMBL ID UniProt ID Name Min activity Assay type Source
No proven targets yet!

Predicted Targets (via Super-PRED):

CHEMBL ID UniProt ID Name Probability Model accuracy
CHEMBL253 P34972 Cannabinoid CB2 receptor 94.23% 97.25%
CHEMBL5619 P27695 DNA-(apurinic or apyrimidinic site) lyase 92.09% 91.11%
CHEMBL3251 P19838 Nuclear factor NF-kappa-B p105 subunit 91.21% 96.09%
CHEMBL1994 P08235 Mineralocorticoid receptor 86.51% 100.00%
CHEMBL3108638 O15164 Transcription intermediary factor 1-alpha 84.65% 95.56%
CHEMBL4803 P29474 Nitric-oxide synthase, endothelial 83.17% 86.00%
CHEMBL3137262 O60341 LSD1/CoREST complex 83.13% 97.09%
CHEMBL2996 Q05655 Protein kinase C delta 82.87% 97.79%
CHEMBL1871 P10275 Androgen Receptor 82.03% 96.43%
CHEMBL221 P23219 Cyclooxygenase-1 81.90% 90.17%
CHEMBL5608 Q16288 NT-3 growth factor receptor 80.91% 95.89%

Plants that contains it

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Below are displayed all the plants proven (via scientific papers) to contain this compound!
To see more specific details click the taxa you are interested in.
Achillea ptarmica subsp. ptarmica
Actinodium cunninghamii
Aframomum melegueta
Agastache rugosa
Aloysia citrodora
Anastrophyllum minutum
Angelica acutiloba
Angelica archangelica
Angelica gigas
Angelica sinensis
Angostura trifoliata
Annona reticulata
Annona squamosa
Artemisia capillaris
Artemisia gmelinii
Artemisia judaica
Artemisia salsoloides
Artemisia schmidtiana
Artemisia vulgaris
Aspilia jolyana
Athanasia crithmifolia
Austrobaileya scandens
Austrobrickellia patens
Austromyrtus dulcis
Baccharis dracunculifolia
Baccharis eggersii
Baccharis santelicis
Baccharis tricuneata
Baccharis uncinella
Balantiopsis rosea
Bazzania praerupta
Bazzania tridens
Bazzania trilobata
Bouchardatia neurococca
Brickellia veronicaefolia
Callicarpa japonica
Calypogeia suecica
Campuloclinium megacephalum
Carapichea ipecacuanha
Cassinia aculeata
Cassinia uncata
Cedrela odorata
Centaurea solstitialis
Citrus medica
Clinopodium grandiflorum
Clinopodium pamphylicum
Clinopodium serpyllifolium subsp. fruticosum
Cnidium monnieri
Conioselinum anthriscoides
Conioselinum smithii
Conioselinum tenuissimum
Coriandrum sativum
Corymbia citriodora
Croton nepetifolius
Croton ovalifolius
Cryptocarya agathophylla
Cryptocarya cunninghamii
Cylindrocolea recurvifolia
Dacrydium nidulum
Daniellia oliveri
Darwinia citriodora
Daucus carota
Disynaphia multicrenulata
Eremanthus glomerulatus
Erigeron bonariensis
Eucalyptus apodophylla
Eucalyptus cloeziana
Eucalyptus dolichorhyncha
Eucalyptus leucoxylon
Ferulago trachycarpa
Gynoxys nitida
Halocarpus bidwillii
Halocarpus biformis
Hedyosmum costaricense
Helichrysum ambiguum
Helichrysum bracteiferum
Helichrysum reflexum
Helietta apiculata
Humulus lupulus
Hypericum perforatum
Hyssopus officinalis
Juglans regia
Kunzea salina
Lallemantia peltata
Lantana camara
Lepechinia chamaedryoides
Litogyne gariepina
Magnolia balansae
Marchesinia brachiata
Marrubium parviflorum
Marsypianthes chamaedrys
Mentha × piperita
Mentha aquatica
Mentha longifolia
Morina persica
Murraya exotica
Murraya paniculata
Nassauvia aculeata
Nepeta trachonitica
Olearia phlogopappa
Ophryosporus floribundus
Origanum × adanense
Origanum acutidens
Origanum laevigatum
Osbornia octodonta
Panax ginseng
Panax notoginseng
Pelargonium endlicherianum
Pelargonium quercifolium
Perymenium klattianum
Pinus sylvestris
Piper arboreum
Piper auritum
Piper cernuum
Piper gaudichaudianum
Piper regnellii
Plagiochila ovalifolia
Plagiochila pulcherrima
Plagiochila rutilans var. moritziana
Plagiochila rutilans var. standleyi
Plagiochila trabeculata
Plagius grandis
Porcelia macrocarpa
Porella acutifolia
Prangos uechtritzii
Prumnopitys ferruginoides
Pteronia incana
Ptilidium ciliare
Saccogyna viticulosa
Salvia cinnabarina
Salvia sahendica
Santolina chamaecyparissus
Satureja wiedemanniana
Schinus molle
Schisandra chinensis
Schistochila aligera
Senecio brasiliensis
Senecio canchahuinganquensis
Senecio cunninghamii
Seriphidium herba-alba
Sideritis brevidens
Sideritis condensata
Sideritis lyciae
Sideritis montana
Stevia amambayensis
Stevia polyphylla
Symphyogyna brongniartii
Syzygiella autumnalis
Tagetes lucida
Tambourissa leptophylla
Teucrium montanum
Teucrium polium subsp. polium
Teucrium pseudoscorodonia
Thymus broussonetii
Thymus funkii
Thymus willkommii
Tordylium apulum
Torilis japonica
Tritomaria quinquedentata
Ursinia abrotanifolia
Valeriana officinalis
Verbesina subcordata
Wedelia regis
Werneria nubigena
Xylopia phloiodora
Zanthoxylum bungeanum
Zanthoxylum schinifolium
Zinnia elegans

Cross-Links

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PubChem 5315347
NPASS NPC227049
LOTUS LTS0225278
wikiData Q104667235