Geraniin

Details

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Internal ID e1f6f836-e32a-4324-ad54-f150c2510c57
Taxonomy Phenylpropanoids and polyketides > Tannins > Hydrolyzable tannins
IUPAC Name [(1R,7R,8S,26R,28S,29R,38R)-1,13,14,15,18,19,20,34,35,39,39-undecahydroxy-2,5,10,23,31-pentaoxo-6,9,24,27,30,40-hexaoxaoctacyclo[34.3.1.04,38.07,26.08,29.011,16.017,22.032,37]tetraconta-3,11,13,15,17,19,21,32,34,36-decaen-28-yl] 3,4,5-trihydroxybenzoate
SMILES (Canonical) C1C2C3C(C(C(O2)OC(=O)C4=CC(=C(C(=C4)O)O)O)OC(=O)C5=CC(=C(C6=C5C7C(=CC(=O)C(C7(O)O)(O6)O)C(=O)O3)O)O)OC(=O)C8=CC(=C(C(=C8C9=C(C(=C(C=C9C(=O)O1)O)O)O)O)O)O
SMILES (Isomeric) C1[C@@H]2[C@@H]3[C@@H]([C@H]([C@@H](O2)OC(=O)C4=CC(=C(C(=C4)O)O)O)OC(=O)C5=CC(=C(C6=C5[C@@H]7C(=CC(=O)[C@@](C7(O)O)(O6)O)C(=O)O3)O)O)OC(=O)C8=CC(=C(C(=C8C9=C(C(=C(C=C9C(=O)O1)O)O)O)O)O)O
InChI InChI=1S/C41H28O27/c42-13-1-8(2-14(43)24(13)48)34(54)67-39-33-32-30(64-38(58)12-6-19(47)41(61)40(59,60)23(12)22-11(37(57)66-33)5-17(46)27(51)31(22)68-41)18(63-39)7-62-35(55)9-3-15(44)25(49)28(52)20(9)21-10(36(56)65-32)4-16(45)26(50)29(21)53/h1-6,18,23,30,32-33,39,42-46,48-53,59-61H,7H2/t18-,23+,30-,32+,33-,39+,41+/m1/s1
InChI Key JQQBXPCJFAKSPG-SVYIMCMUSA-N
Popularity 105 references in papers

Physical and Chemical Properties

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Molecular Formula C41H28O27
Molecular Weight 952.60 g/mol
Exact Mass 952.08179561 g/mol
Topological Polar Surface Area (TPSA) 450.00 Ų
XlogP -0.60
Atomic LogP (AlogP) -1.10
H-Bond Acceptor 27
H-Bond Donor 14
Rotatable Bonds 2

Synonyms

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60976-49-0
Geraniiin
CHEBI:5328
CHEMBL506069
C10230
D0C6QS
JQQBXPCJFAKSPG-SVYIMCMUSA-N
BDBM50242278
AKOS015965424
AC-8425
There are more than 10 synonyms. If you wish to see them all click here.

2D Structure

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2D Structure of Geraniin

3D Structure

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ADMET Properties (via admetSAR 2)

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Target Value Probability (raw) Probability (%)
Human Intestinal Absorption + 0.7612 76.12%
Caco-2 - 0.8798 87.98%
Blood Brain Barrier - 0.8000 80.00%
Human oral bioavailability - 0.5000 50.00%
Subcellular localzation Mitochondria 0.6690 66.90%
OATP2B1 inhibitior - 0.7106 71.06%
OATP1B1 inhibitior + 0.7528 75.28%
OATP1B3 inhibitior + 0.9429 94.29%
MATE1 inhibitior - 0.5800 58.00%
OCT2 inhibitior - 0.8250 82.50%
BSEP inhibitior + 0.9282 92.82%
P-glycoprotein inhibitior + 0.7459 74.59%
P-glycoprotein substrate + 0.5980 59.80%
CYP3A4 substrate + 0.6966 69.66%
CYP2C9 substrate - 0.7979 79.79%
CYP2D6 substrate - 0.8687 86.87%
CYP3A4 inhibition - 0.8235 82.35%
CYP2C9 inhibition - 0.5802 58.02%
CYP2C19 inhibition - 0.5313 53.13%
CYP2D6 inhibition - 0.8388 83.88%
CYP1A2 inhibition - 0.7992 79.92%
CYP2C8 inhibition + 0.7518 75.18%
CYP inhibitory promiscuity - 0.7826 78.26%
UGT catelyzed + 0.6000 60.00%
Carcinogenicity (binary) - 0.9900 99.00%
Carcinogenicity (trinary) Non-required 0.6394 63.94%
Eye corrosion - 0.9868 98.68%
Eye irritation - 0.8921 89.21%
Skin irritation - 0.7325 73.25%
Skin corrosion - 0.9394 93.94%
Ames mutagenesis + 0.5909 59.09%
Human Ether-a-go-go-Related Gene inhibition + 0.6651 66.51%
Micronuclear + 0.7733 77.33%
Hepatotoxicity - 0.6447 64.47%
skin sensitisation - 0.7419 74.19%
Respiratory toxicity + 0.6778 67.78%
Reproductive toxicity + 0.7556 75.56%
Mitochondrial toxicity + 0.6250 62.50%
Nephrotoxicity - 0.7961 79.61%
Acute Oral Toxicity (c) III 0.4653 46.53%
Estrogen receptor binding + 0.7863 78.63%
Androgen receptor binding + 0.7668 76.68%
Thyroid receptor binding - 0.4927 49.27%
Glucocorticoid receptor binding + 0.5735 57.35%
Aromatase binding + 0.5537 55.37%
PPAR gamma + 0.7427 74.27%
Honey bee toxicity - 0.7404 74.04%
Biodegradation - 0.8750 87.50%
Crustacea aquatic toxicity + 0.6700 67.00%
Fish aquatic toxicity + 0.9721 97.21%

Targets

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Proven Targets:

CHEMBL ID UniProt ID Name Min activity Assay type Source
No proven targets yet!

Predicted Targets (via Super-PRED):

CHEMBL ID UniProt ID Name Probability Model accuracy
CHEMBL5619 P27695 DNA-(apurinic or apyrimidinic site) lyase 99.55% 91.11%
CHEMBL3475 P05121 Plasminogen activator inhibitor-1 91.89% 83.00%
CHEMBL1806 P11388 DNA topoisomerase II alpha 91.67% 89.00%
CHEMBL1293249 Q13887 Kruppel-like factor 5 91.41% 86.33%
CHEMBL1951 P21397 Monoamine oxidase A 91.28% 91.49%
CHEMBL2635 P51452 Dual specificity protein phosphatase 3 90.63% 94.00%
CHEMBL3108638 O15164 Transcription intermediary factor 1-alpha 88.77% 95.56%
CHEMBL335 P18031 Protein-tyrosine phosphatase 1B 87.98% 95.17%
CHEMBL3038477 P67870 Casein kinase II alpha/beta 87.55% 99.23%
CHEMBL2581 P07339 Cathepsin D 86.85% 98.95%
CHEMBL3137262 O60341 LSD1/CoREST complex 86.80% 97.09%
CHEMBL340 P08684 Cytochrome P450 3A4 85.76% 91.19%
CHEMBL5608 Q16288 NT-3 growth factor receptor 85.33% 95.89%
CHEMBL1860 P10827 Thyroid hormone receptor alpha 84.52% 99.15%
CHEMBL2094127 P06493 Cyclin-dependent kinase 1/cyclin B 83.56% 96.00%
CHEMBL241 Q14432 Phosphodiesterase 3A 82.95% 92.94%
CHEMBL2007 P16234 Platelet-derived growth factor receptor alpha 81.49% 91.07%
CHEMBL3864 Q06124 Protein-tyrosine phosphatase 2C 81.15% 94.42%
CHEMBL1781 P11387 DNA topoisomerase I 80.94% 97.00%
CHEMBL2373 P21730 C5a anaphylatoxin chemotactic receptor 80.56% 92.62%
CHEMBL3713062 P10646 Tissue factor pathway inhibitor 80.38% 97.33%
CHEMBL5255 O00206 Toll-like receptor 4 80.11% 92.50%

Plants that contains it

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Below are displayed all the plants proven (via scientific papers) to contain this compound!
To see more specific details click the taxa you are interested in.
Acer maximowiczianum
Acer tataricum subsp. ginnala
Actiniopteris radiata
Aframomum limbatum
Aglaia laxiflora
Andrographis paniculata
Antidesma montanum var. montanum
Aristolochia zollingeriana
Artemisia carvifolia
Balanophora involucrata
Bartramia pomiformis
Beilschmiedia anacardioides
Bischofia javanica
Bobgunnia madagascariensis
Callicarpa maingayi
Calodendrum capense
Camellia sinensis
Cedrus libani
Cephalaria kotschyi
Cephalaria uralensis
Cercidiphyllum japonicum
Cerinthe minor
Craspidospermum verticillatum
Crotalaria aegyptiaca
Croton caudatus
Dicoma capensis
Digitalis isabelliana
Dioscorea japonica
Ehretia dicksonii
Elaeocarpus fuscoides
Elaeocarpus sylvestris
Ericameria parryi
Erodium cicutarium
Erodium stephanianum
Euphorbia helioscopia
Euphorbia humifusa
Euphorbia jolkinii
Euphorbia thymifolia
Euphorbia tirucalli
Euphorbia turczaninowii
Excoecaria agallocha
Forsythia suspensa
Geranium carolinianum
Geranium sibiricum
Geranium sylvaticum
Geranium thunbergii
Geranium wilfordii
Haplophyllum ferganicum
Heterocentron subtriplinervium
Hypericum ascyron
Ixeris stolonifera
Jacobaea adonidifolia
Jacobaea renardii
Khaya ivorensis
Khaya senegalensis
Larix gmelinii var. gmelinii
Lotus japonicus
Lupinus verbasciformis
Macaranga sinensis
Macaranga tanarius
Mallotus japonicus
Meconopsis horridula
Melaleuca rhaphiophylla
Nymphaea tetragona
Oxera splendida
Parthenocissus tricuspidata
Phyllanthus amarus
Phyllanthus emblica
Phyllanthus sellowianus
Phyllanthus urinaria
Prunus armeniaca
Scopolia carniolica
Senna siamea
Sextonia rubra
Sonchus ortunoi
Spondias mombin
Stevia eupatoria
Styrax ferrugineus
Terminalia catappa
Triaenophora rupestris
Vernicia fordii
Vincetoxicum hirundinaria
Virola multinervia
Vitex pinnata
Zingiber officinale

Cross-Links

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PubChem 3001497
NPASS NPC201814
ChEMBL CHEMBL506069
LOTUS LTS0223783
wikiData Q5549854