Gentiopicrin

Details

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Internal ID 0c94481d-b14f-45fc-9b9b-6b28264899b2
Taxonomy Organic oxygen compounds > Organooxygen compounds > Carbohydrates and carbohydrate conjugates > Glycosyl compounds > O-glycosyl compounds
IUPAC Name (3S,4R)-4-ethenyl-3-[(2S,3R,4S,5S,6R)-3,4,5-trihydroxy-6-(hydroxymethyl)oxan-2-yl]oxy-4,6-dihydro-3H-pyrano[3,4-c]pyran-8-one
SMILES (Canonical) C=CC1C(OC=C2C1=CCOC2=O)OC3C(C(C(C(O3)CO)O)O)O
SMILES (Isomeric) C=C[C@H]1[C@@H](OC=C2C1=CCOC2=O)O[C@H]3[C@@H]([C@H]([C@@H]([C@H](O3)CO)O)O)O
InChI InChI=1S/C16H20O9/c1-2-7-8-3-4-22-14(21)9(8)6-23-15(7)25-16-13(20)12(19)11(18)10(5-17)24-16/h2-3,6-7,10-13,15-20H,1,4-5H2/t7-,10-,11-,12+,13-,15+,16+/m1/s1
InChI Key DUAGQYUORDTXOR-GPQRQXLASA-N
Popularity 379 references in papers

Physical and Chemical Properties

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Molecular Formula C16H20O9
Molecular Weight 356.32 g/mol
Exact Mass 356.11073221 g/mol
Topological Polar Surface Area (TPSA) 135.00 Ų
XlogP -1.20
Atomic LogP (AlogP) -1.67
H-Bond Acceptor 9
H-Bond Donor 4
Rotatable Bonds 4

Synonyms

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Gentiopicrin
20831-76-9
UNII-0WE09Z21RC
0WE09Z21RC
CHEBI:5321
DTXSID40878043
EINECS 244-070-2
NSC 606402
NSC-606402
Gentiopicroside, >=98% (HPLC)
There are more than 10 synonyms. If you wish to see them all click here.

2D Structure

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2D Structure of Gentiopicrin

3D Structure

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ADMET Properties (via admetSAR 2)

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Target Value Probability (raw) Probability (%)
Human Intestinal Absorption - 0.5678 56.78%
Caco-2 - 0.8386 83.86%
Blood Brain Barrier - 0.6000 60.00%
Human oral bioavailability - 0.8143 81.43%
Subcellular localzation Mitochondria 0.6837 68.37%
OATP2B1 inhibitior - 0.8585 85.85%
OATP1B1 inhibitior + 0.8612 86.12%
OATP1B3 inhibitior + 0.9443 94.43%
MATE1 inhibitior - 0.9400 94.00%
OCT2 inhibitior - 0.9750 97.50%
BSEP inhibitior - 0.8156 81.56%
P-glycoprotein inhibitior - 0.8946 89.46%
P-glycoprotein substrate - 0.9220 92.20%
CYP3A4 substrate + 0.5522 55.22%
CYP2C9 substrate - 1.0000 100.00%
CYP2D6 substrate - 0.8676 86.76%
CYP3A4 inhibition - 0.9097 90.97%
CYP2C9 inhibition - 0.8997 89.97%
CYP2C19 inhibition - 0.8303 83.03%
CYP2D6 inhibition - 0.8926 89.26%
CYP1A2 inhibition - 0.8880 88.80%
CYP2C8 inhibition - 0.7928 79.28%
CYP inhibitory promiscuity - 0.8274 82.74%
UGT catelyzed + 0.7000 70.00%
Carcinogenicity (binary) - 1.0000 100.00%
Carcinogenicity (trinary) Non-required 0.7111 71.11%
Eye corrosion - 0.9842 98.42%
Eye irritation - 0.8859 88.59%
Skin irritation - 0.7881 78.81%
Skin corrosion - 0.9493 94.93%
Ames mutagenesis - 0.6200 62.00%
Human Ether-a-go-go-Related Gene inhibition - 0.6934 69.34%
Micronuclear - 0.7041 70.41%
Hepatotoxicity - 0.7642 76.42%
skin sensitisation - 0.8417 84.17%
Respiratory toxicity + 0.5444 54.44%
Reproductive toxicity + 0.7111 71.11%
Mitochondrial toxicity - 0.5625 56.25%
Nephrotoxicity - 0.5582 55.82%
Acute Oral Toxicity (c) III 0.3768 37.68%
Estrogen receptor binding - 0.4922 49.22%
Androgen receptor binding + 0.5729 57.29%
Thyroid receptor binding + 0.5453 54.53%
Glucocorticoid receptor binding - 0.5894 58.94%
Aromatase binding + 0.5541 55.41%
PPAR gamma + 0.6123 61.23%
Honey bee toxicity - 0.7332 73.32%
Biodegradation - 0.5750 57.50%
Crustacea aquatic toxicity - 0.6800 68.00%
Fish aquatic toxicity + 0.7075 70.75%

Targets

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Proven Targets:

CHEMBL ID UniProt ID Name Min activity Assay type Source
No proven targets yet!

Predicted Targets (via Super-PRED):

CHEMBL ID UniProt ID Name Probability Model accuracy
CHEMBL5619 P27695 DNA-(apurinic or apyrimidinic site) lyase 98.08% 91.11%
CHEMBL1293255 P15428 15-hydroxyprostaglandin dehydrogenase [NAD+] 94.10% 83.57%
CHEMBL3108638 O15164 Transcription intermediary factor 1-alpha 89.66% 95.56%
CHEMBL3137262 O60341 LSD1/CoREST complex 87.81% 97.09%
CHEMBL2581 P07339 Cathepsin D 87.48% 98.95%
CHEMBL1293249 Q13887 Kruppel-like factor 5 86.19% 86.33%
CHEMBL1951 P21397 Monoamine oxidase A 86.04% 91.49%
CHEMBL3401 O75469 Pregnane X receptor 85.99% 94.73%
CHEMBL1806 P11388 DNA topoisomerase II alpha 85.78% 89.00%
CHEMBL253 P34972 Cannabinoid CB2 receptor 84.22% 97.25%
CHEMBL4208 P20618 Proteasome component C5 81.28% 90.00%
CHEMBL1994 P08235 Mineralocorticoid receptor 81.09% 100.00%
CHEMBL3251 P19838 Nuclear factor NF-kappa-B p105 subunit 80.83% 96.09%
CHEMBL3060 Q9Y345 Glycine transporter 2 80.39% 99.17%

Cross-Links

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PubChem 88708
NPASS NPC170204
LOTUS LTS0238348
wikiData Q105218723