Columbamine

Details

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Internal ID 84579d97-09d0-4409-9d5a-9f1d10ef32e4
Taxonomy Alkaloids and derivatives > Protoberberine alkaloids and derivatives
IUPAC Name 3,9,10-trimethoxy-5,6-dihydroisoquinolino[2,1-b]isoquinolin-7-ium-2-ol
SMILES (Canonical) COC1=C(C2=C[N+]3=C(C=C2C=C1)C4=CC(=C(C=C4CC3)OC)O)OC
SMILES (Isomeric) COC1=C(C2=C[N+]3=C(C=C2C=C1)C4=CC(=C(C=C4CC3)OC)O)OC
InChI InChI=1S/C20H19NO4/c1-23-18-5-4-12-8-16-14-10-17(22)19(24-2)9-13(14)6-7-21(16)11-15(12)20(18)25-3/h4-5,8-11H,6-7H2,1-3H3/p+1
InChI Key YYFOFDHQVIODOQ-UHFFFAOYSA-O
Popularity 65 references in papers

Physical and Chemical Properties

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Molecular Formula C20H20NO4+
Molecular Weight 338.40 g/mol
Exact Mass 338.13923312 g/mol
Topological Polar Surface Area (TPSA) 51.80 Ų
XlogP 3.40

Synonyms

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3621-36-1
Dehydroisocorypalmine
UNII-7T4808FEJW
3,9,10-trimethoxy-5,6-dihydroisoquinolino[2,1-b]isoquinolin-7-ium-2-ol
7T4808FEJW
CHEMBL400345
Columbamin;Dehydroisocorypalmine
CHEBI:15920
Dibenzo(a,g)quinolizinium, 5,6-dihydro-2-hydroxy-3,9,10-trimethoxy-
2-hydroxy-3,9,10-trimethoxy-5,6-dihydroisoquino[3,2-a]isoquinolinium
There are more than 10 synonyms. If you wish to see them all click here.

2D Structure

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2D Structure of Columbamine

3D Structure

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ADMET Properties (via admetSAR 2)

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Target Value Probability (raw) Probability (%)
No predicted properties yet!

Targets

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Proven Targets:

CHEMBL ID UniProt ID Name Min activity Assay type Source
CHEMBL340 P08684 Cytochrome P450 3A4 30600 nM
IC50
PMID: 17994701

Predicted Targets (via Super-PRED):

CHEMBL ID UniProt ID Name Probability Model accuracy
CHEMBL1951 P21397 Monoamine oxidase A 98.14% 91.49%
CHEMBL5619 P27695 DNA-(apurinic or apyrimidinic site) lyase 95.68% 91.11%
CHEMBL225 P28335 Serotonin 2c (5-HT2c) receptor 92.88% 89.62%
CHEMBL3108638 O15164 Transcription intermediary factor 1-alpha 92.36% 95.56%
CHEMBL2635 P51452 Dual specificity protein phosphatase 3 90.94% 94.00%
CHEMBL3192 Q9BY41 Histone deacetylase 8 90.78% 93.99%
CHEMBL2535 P11166 Glucose transporter 89.82% 98.75%
CHEMBL241 Q14432 Phosphodiesterase 3A 89.69% 92.94%
CHEMBL3251 P19838 Nuclear factor NF-kappa-B p105 subunit 88.87% 96.09%
CHEMBL5747 Q92793 CREB-binding protein 88.06% 95.12%
CHEMBL2581 P07339 Cathepsin D 87.43% 98.95%
CHEMBL1293249 Q13887 Kruppel-like factor 5 86.85% 86.33%
CHEMBL2056 P21728 Dopamine D1 receptor 85.81% 91.00%
CHEMBL1937 Q92769 Histone deacetylase 2 85.24% 94.75%
CHEMBL1860 P10827 Thyroid hormone receptor alpha 84.80% 99.15%
CHEMBL3060 Q9Y345 Glycine transporter 2 82.09% 99.17%
CHEMBL1966 Q02127 Dihydroorotate dehydrogenase 81.79% 96.09%
CHEMBL261 P00915 Carbonic anhydrase I 81.45% 96.76%
CHEMBL3438 Q05513 Protein kinase C zeta 81.45% 88.48%
CHEMBL4208 P20618 Proteasome component C5 81.10% 90.00%
CHEMBL5608 Q16288 NT-3 growth factor receptor 80.79% 95.89%

Cross-Links

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PubChem 72310
NPASS NPC202605
ChEMBL CHEMBL400345
LOTUS LTS0111553
wikiData Q27098298