Sambunigrin

Details

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Internal ID b637c0ea-cab3-418f-b7c1-fc6635b7b504
Taxonomy Organic oxygen compounds > Organooxygen compounds > Carbohydrates and carbohydrate conjugates > Glycosyl compounds > Cyanogenic glycosides
IUPAC Name (2S)-2-phenyl-2-[(2R,3R,4S,5S,6R)-3,4,5-trihydroxy-6-(hydroxymethyl)oxan-2-yl]oxyacetonitrile
SMILES (Canonical) C1=CC=C(C=C1)C(C#N)OC2C(C(C(C(O2)CO)O)O)O
SMILES (Isomeric) C1=CC=C(C=C1)[C@@H](C#N)O[C@H]2[C@@H]([C@H]([C@@H]([C@H](O2)CO)O)O)O
InChI InChI=1S/C14H17NO6/c15-6-9(8-4-2-1-3-5-8)20-14-13(19)12(18)11(17)10(7-16)21-14/h1-5,9-14,16-19H,7H2/t9-,10-,11-,12+,13-,14-/m1/s1
InChI Key ZKSZEJFBGODIJW-YOVYLDAJSA-N
Popularity 4 references in papers

Physical and Chemical Properties

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Molecular Formula C14H17NO6
Molecular Weight 295.29 g/mol
Exact Mass 295.10558726 g/mol
Topological Polar Surface Area (TPSA) 123.00 Ų
XlogP -0.70
Atomic LogP (AlogP) -0.93
H-Bond Acceptor 7
H-Bond Donor 4
Rotatable Bonds 4

Synonyms

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(S)-prunasin
99-19-4
L-Prunasin
(2S)-Sambunigrin
(S)-Mandelonitrile beta-D-glucoside
UNII-9UZJ2ZO1HS
9UZJ2ZO1HS
(2S)-2-phenyl-2-{[(2R,3R,4S,5S,6R)-3,4,5-trihydroxy-6-(hydroxymethyl)oxan-2-yl]oxy}acetonitrile
(2S)-(beta-D-glucopyranosyloxy)(phenyl)acetonitrile
Benzeneacetonitrile, a-(b-D-glucopyranosyloxy)-, (aS)-
There are more than 10 synonyms. If you wish to see them all click here.

2D Structure

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2D Structure of Sambunigrin

3D Structure

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ADMET Properties (via admetSAR 2)

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Target Value Probability (raw) Probability (%)
Human Intestinal Absorption - 0.9322 93.22%
Caco-2 - 0.8495 84.95%
Blood Brain Barrier + 0.5500 55.00%
Human oral bioavailability - 0.6429 64.29%
Subcellular localzation Mitochondria 0.6483 64.83%
OATP2B1 inhibitior - 1.0000 100.00%
OATP1B1 inhibitior + 0.9381 93.81%
OATP1B3 inhibitior + 0.9429 94.29%
MATE1 inhibitior - 0.9000 90.00%
OCT2 inhibitior - 0.9500 95.00%
BSEP inhibitior - 0.9298 92.98%
P-glycoprotein inhibitior - 0.9091 90.91%
P-glycoprotein substrate - 0.9763 97.63%
CYP3A4 substrate - 0.5605 56.05%
CYP2C9 substrate - 1.0000 100.00%
CYP2D6 substrate - 0.8151 81.51%
CYP3A4 inhibition - 0.8030 80.30%
CYP2C9 inhibition - 0.8490 84.90%
CYP2C19 inhibition - 0.8474 84.74%
CYP2D6 inhibition - 0.9107 91.07%
CYP1A2 inhibition - 0.8966 89.66%
CYP2C8 inhibition - 0.8569 85.69%
CYP inhibitory promiscuity - 0.6772 67.72%
UGT catelyzed + 0.8000 80.00%
Carcinogenicity (binary) - 0.9700 97.00%
Carcinogenicity (trinary) Non-required 0.7237 72.37%
Eye corrosion - 0.9917 99.17%
Eye irritation - 0.9540 95.40%
Skin irritation - 0.8588 85.88%
Skin corrosion - 0.9684 96.84%
Ames mutagenesis - 0.5900 59.00%
Human Ether-a-go-go-Related Gene inhibition - 0.3814 38.14%
Micronuclear - 0.6300 63.00%
Hepatotoxicity - 0.7875 78.75%
skin sensitisation - 0.8873 88.73%
Respiratory toxicity + 0.6000 60.00%
Reproductive toxicity + 0.5667 56.67%
Mitochondrial toxicity - 0.6625 66.25%
Nephrotoxicity - 0.7762 77.62%
Acute Oral Toxicity (c) III 0.8013 80.13%
Estrogen receptor binding - 0.8709 87.09%
Androgen receptor binding - 0.5920 59.20%
Thyroid receptor binding - 0.5754 57.54%
Glucocorticoid receptor binding - 0.5654 56.54%
Aromatase binding - 0.7095 70.95%
PPAR gamma - 0.5500 55.00%
Honey bee toxicity - 0.5228 52.28%
Biodegradation - 0.6000 60.00%
Crustacea aquatic toxicity - 0.5700 57.00%
Fish aquatic toxicity - 0.8259 82.59%

Targets

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Proven Targets:

CHEMBL ID UniProt ID Name Min activity Assay type Source
No proven targets yet!

Predicted Targets (via Super-PRED):

CHEMBL ID UniProt ID Name Probability Model accuracy
CHEMBL5619 P27695 DNA-(apurinic or apyrimidinic site) lyase 97.35% 91.11%
CHEMBL3251 P19838 Nuclear factor NF-kappa-B p105 subunit 91.97% 96.09%
CHEMBL2581 P07339 Cathepsin D 91.86% 98.95%
CHEMBL2035 P08912 Muscarinic acetylcholine receptor M5 91.34% 94.62%
CHEMBL221 P23219 Cyclooxygenase-1 90.13% 90.17%
CHEMBL216 P11229 Muscarinic acetylcholine receptor M1 88.43% 94.23%
CHEMBL1821 P08173 Muscarinic acetylcholine receptor M4 87.83% 94.08%
CHEMBL1075094 Q16236 Nuclear factor erythroid 2-related factor 2 87.02% 96.00%
CHEMBL3401 O75469 Pregnane X receptor 86.20% 94.73%
CHEMBL226 P30542 Adenosine A1 receptor 85.48% 95.93%
CHEMBL3476 O15111 Inhibitor of nuclear factor kappa B kinase alpha subunit 82.43% 95.83%
CHEMBL1293249 Q13887 Kruppel-like factor 5 82.32% 86.33%
CHEMBL3091268 Q92753 Nuclear receptor ROR-beta 81.45% 95.50%
CHEMBL3108638 O15164 Transcription intermediary factor 1-alpha 80.97% 95.56%

Cross-Links

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PubChem 91434
NPASS NPC173696
LOTUS LTS0035643
wikiData Q2217000