Nitidine

Details

Top
Internal ID b90085bb-08be-4b1a-8f95-9a575c089e89
Taxonomy Organoheterocyclic compounds > Quinolines and derivatives > Benzoquinolines > Phenanthridines and derivatives
IUPAC Name 2,3-dimethoxy-12-methyl-[1,3]benzodioxolo[5,6-c]phenanthridin-12-ium
SMILES (Canonical) C[N+]1=CC2=CC(=C(C=C2C3=C1C4=CC5=C(C=C4C=C3)OCO5)OC)OC
SMILES (Isomeric) C[N+]1=CC2=CC(=C(C=C2C3=C1C4=CC5=C(C=C4C=C3)OCO5)OC)OC
InChI InChI=1S/C21H18NO4/c1-22-10-13-7-17(23-2)18(24-3)8-15(13)14-5-4-12-6-19-20(26-11-25-19)9-16(12)21(14)22/h4-10H,11H2,1-3H3/q+1
InChI Key KKMPSGJPCCJYRV-UHFFFAOYSA-N
Popularity 99 references in papers

Physical and Chemical Properties

Top
Molecular Formula C21H18NO4+
Molecular Weight 348.40 g/mol
Exact Mass 348.12358306 g/mol
Topological Polar Surface Area (TPSA) 40.80 Ų
XlogP 4.60
Atomic LogP (AlogP) 3.72
H-Bond Acceptor 4
H-Bond Donor 0
Rotatable Bonds 2

Synonyms

Top
6872-57-7
(1,3)Benzodioxolo(5,6-c)phenanthridinium, 2,3-dimethoxy-12-methyl-
CHEBI:7578
2,3-dimethoxy-12-methyl-[1,3]benzodioxolo[5,6-c]phenanthridin-12-ium
NCIMech_000542
Neuro_000081
[1,3]Benzodioxolo[5,6-c]phenanthridinium, 2,3-dimethoxy-12-methyl-
UNII-933301178Z
933301178Z
nitidine cation
There are more than 10 synonyms. If you wish to see them all click here.

2D Structure

Top
2D Structure of Nitidine

3D Structure

Top

ADMET Properties (via admetSAR 2)

Top
Target Value Probability (raw) Probability (%)
Human Intestinal Absorption + 0.6960 69.60%
Caco-2 + 0.9525 95.25%
Blood Brain Barrier + 0.5750 57.50%
Human oral bioavailability + 0.6000 60.00%
Subcellular localzation Nucleus 0.6044 60.44%
OATP2B1 inhibitior - 1.0000 100.00%
OATP1B1 inhibitior + 0.9518 95.18%
OATP1B3 inhibitior + 0.9422 94.22%
MATE1 inhibitior - 0.7400 74.00%
OCT2 inhibitior - 0.8598 85.98%
BSEP inhibitior + 0.8472 84.72%
P-glycoprotein inhibitior + 0.7710 77.10%
P-glycoprotein substrate - 0.6567 65.67%
CYP3A4 substrate - 0.5200 52.00%
CYP2C9 substrate - 1.0000 100.00%
CYP2D6 substrate - 0.7625 76.25%
CYP3A4 inhibition - 0.6060 60.60%
CYP2C9 inhibition - 0.8032 80.32%
CYP2C19 inhibition + 0.8729 87.29%
CYP2D6 inhibition + 0.7921 79.21%
CYP1A2 inhibition + 0.9027 90.27%
CYP2C8 inhibition + 0.4789 47.89%
CYP inhibitory promiscuity + 0.8851 88.51%
UGT catelyzed - 0.0000 0.00%
Carcinogenicity (binary) - 0.9900 99.00%
Carcinogenicity (trinary) Non-required 0.3781 37.81%
Eye corrosion - 0.9883 98.83%
Eye irritation - 0.8015 80.15%
Skin irritation - 0.8037 80.37%
Skin corrosion - 0.9526 95.26%
Ames mutagenesis + 0.6700 67.00%
Human Ether-a-go-go-Related Gene inhibition + 0.6941 69.41%
Micronuclear + 0.7300 73.00%
Hepatotoxicity + 0.8625 86.25%
skin sensitisation - 0.8739 87.39%
Respiratory toxicity + 0.6556 65.56%
Reproductive toxicity + 0.7111 71.11%
Mitochondrial toxicity + 0.6875 68.75%
Nephrotoxicity - 0.5750 57.50%
Acute Oral Toxicity (c) III 0.6542 65.42%
Estrogen receptor binding + 0.8703 87.03%
Androgen receptor binding + 0.7081 70.81%
Thyroid receptor binding + 0.7237 72.37%
Glucocorticoid receptor binding + 0.8927 89.27%
Aromatase binding - 0.5957 59.57%
PPAR gamma + 0.7564 75.64%
Honey bee toxicity - 0.8613 86.13%
Biodegradation - 0.9500 95.00%
Crustacea aquatic toxicity + 0.7200 72.00%
Fish aquatic toxicity + 0.7306 73.06%

Targets

Top

Proven Targets:

CHEMBL ID UniProt ID Name Min activity Assay type Source
No proven targets yet!

Predicted Targets (via Super-PRED):

CHEMBL ID UniProt ID Name Probability Model accuracy
CHEMBL4303 P08238 Heat shock protein HSP 90-beta 95.31% 96.77%
CHEMBL5619 P27695 DNA-(apurinic or apyrimidinic site) lyase 93.08% 91.11%
CHEMBL241 Q14432 Phosphodiesterase 3A 91.43% 92.94%
CHEMBL4203 Q9HAZ1 Dual specificity protein kinase CLK4 90.69% 94.45%
CHEMBL225 P28335 Serotonin 2c (5-HT2c) receptor 90.57% 89.62%
CHEMBL1937 Q92769 Histone deacetylase 2 89.66% 94.75%
CHEMBL5925 P22413 Ectonucleotide pyrophosphatase/phosphodiesterase family member 1 89.39% 92.38%
CHEMBL1293249 Q13887 Kruppel-like factor 5 89.02% 86.33%
CHEMBL2635 P51452 Dual specificity protein phosphatase 3 88.56% 94.00%
CHEMBL2373 P21730 C5a anaphylatoxin chemotactic receptor 87.99% 92.62%
CHEMBL3108638 O15164 Transcription intermediary factor 1-alpha 87.98% 95.56%
CHEMBL1075094 Q16236 Nuclear factor erythroid 2-related factor 2 87.42% 96.00%
CHEMBL3251 P19838 Nuclear factor NF-kappa-B p105 subunit 85.86% 96.09%
CHEMBL2716 Q8WUI4 Histone deacetylase 7 85.48% 89.44%
CHEMBL2535 P11166 Glucose transporter 84.16% 98.75%
CHEMBL4145 Q9UKV0 Histone deacetylase 9 83.32% 85.49%
CHEMBL5608 Q16288 NT-3 growth factor receptor 83.31% 95.89%
CHEMBL3192 Q9BY41 Histone deacetylase 8 81.53% 93.99%
CHEMBL4481 P35228 Nitric oxide synthase, inducible 81.19% 94.80%

Cross-Links

Top
PubChem 4501
NPASS NPC271215
LOTUS LTS0077169
wikiData Q15425772