(+)-germacrene D

Details

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Internal ID 8f28b5c1-bf57-4a7a-85cf-1ea10eb979f7
Taxonomy Lipids and lipid-like molecules > Prenol lipids > Sesquiterpenoids > Germacrane sesquiterpenoids
IUPAC Name (1E,6E,8R)-1-methyl-5-methylidene-8-propan-2-ylcyclodeca-1,6-diene
SMILES (Canonical) CC1=CCCC(=C)C=CC(CC1)C(C)C
SMILES (Isomeric) C/C/1=C\CCC(=C)/C=C/[C@H](CC1)C(C)C
InChI InChI=1S/C15H24/c1-12(2)15-10-8-13(3)6-5-7-14(4)9-11-15/h7-8,10,12,15H,3,5-6,9,11H2,1-2,4H3/b10-8+,14-7+/t15-/m1/s1
InChI Key GAIBLDCXCZKKJE-RGZOGPIRSA-N
Popularity 139 references in papers

Physical and Chemical Properties

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Molecular Formula C15H24
Molecular Weight 204.35 g/mol
Exact Mass 204.187800766 g/mol
Topological Polar Surface Area (TPSA) 0.00 Ų
XlogP 4.70
Atomic LogP (AlogP) 4.89
H-Bond Acceptor 0
H-Bond Donor 0
Rotatable Bonds 1

Synonyms

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CHEBI:49046
(1E,5E,7betaH)-germacra-1(10),4(15),5-triene
Germacrene D
(1E,6E,8R)-1-methyl-5-methylidene-8-(propan-2-yl)cyclodeca-1,6-diene
CHEMBL1836650
C19619
Q27121452
(1E,6E,8R)-1-methyl-5-methylidene-8-propan-2-ylcyclodeca-1,6-diene
68005-97-0

2D Structure

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2D Structure of (+)-germacrene D

3D Structure

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ADMET Properties (via admetSAR 2)

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Target Value Probability (raw) Probability (%)
Human Intestinal Absorption + 0.9917 99.17%
Caco-2 + 0.8959 89.59%
Blood Brain Barrier + 0.9500 95.00%
Human oral bioavailability + 0.7571 75.71%
Subcellular localzation Lysosomes 0.4651 46.51%
OATP2B1 inhibitior - 0.8593 85.93%
OATP1B1 inhibitior + 0.9618 96.18%
OATP1B3 inhibitior + 0.9412 94.12%
MATE1 inhibitior - 0.9400 94.00%
OCT2 inhibitior - 0.6750 67.50%
BSEP inhibitior - 0.7425 74.25%
P-glycoprotein inhibitior - 0.9497 94.97%
P-glycoprotein substrate - 0.8867 88.67%
CYP3A4 substrate - 0.5573 55.73%
CYP2C9 substrate - 0.8164 81.64%
CYP2D6 substrate - 0.7751 77.51%
CYP3A4 inhibition - 0.9422 94.22%
CYP2C9 inhibition - 0.8228 82.28%
CYP2C19 inhibition - 0.7961 79.61%
CYP2D6 inhibition - 0.9409 94.09%
CYP1A2 inhibition - 0.6853 68.53%
CYP2C8 inhibition - 0.8543 85.43%
CYP inhibitory promiscuity - 0.7758 77.58%
UGT catelyzed - 0.0000 0.00%
Carcinogenicity (binary) - 0.6700 67.00%
Carcinogenicity (trinary) Warning 0.5024 50.24%
Eye corrosion + 0.5274 52.74%
Eye irritation + 0.5672 56.72%
Skin irritation + 0.7425 74.25%
Skin corrosion - 0.9779 97.79%
Ames mutagenesis - 0.8000 80.00%
Human Ether-a-go-go-Related Gene inhibition - 0.3620 36.20%
Micronuclear - 0.9900 99.00%
Hepatotoxicity - 0.5300 53.00%
skin sensitisation + 0.8987 89.87%
Respiratory toxicity - 0.6778 67.78%
Reproductive toxicity - 0.7889 78.89%
Mitochondrial toxicity - 0.7000 70.00%
Nephrotoxicity - 0.6717 67.17%
Acute Oral Toxicity (c) III 0.8141 81.41%
Estrogen receptor binding - 0.9607 96.07%
Androgen receptor binding - 0.8279 82.79%
Thyroid receptor binding - 0.6842 68.42%
Glucocorticoid receptor binding - 0.7441 74.41%
Aromatase binding - 0.9074 90.74%
PPAR gamma - 0.8182 81.82%
Honey bee toxicity - 0.8608 86.08%
Biodegradation + 0.5500 55.00%
Crustacea aquatic toxicity + 0.5500 55.00%
Fish aquatic toxicity + 0.9974 99.74%

Targets

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Proven Targets:

CHEMBL ID UniProt ID Name Min activity Assay type Source
No proven targets yet!

Predicted Targets (via Super-PRED):

CHEMBL ID UniProt ID Name Probability Model accuracy
CHEMBL253 P34972 Cannabinoid CB2 receptor 92.74% 97.25%
CHEMBL3108638 O15164 Transcription intermediary factor 1-alpha 85.64% 95.56%
CHEMBL3359 P21462 Formyl peptide receptor 1 84.30% 93.56%
CHEMBL3130 O00329 PI3-kinase p110-delta subunit 83.74% 96.47%
CHEMBL1907594 P30926 Neuronal acetylcholine receptor; alpha3/beta4 82.76% 97.23%
CHEMBL5619 P27695 DNA-(apurinic or apyrimidinic site) lyase 82.73% 91.11%
CHEMBL1994 P08235 Mineralocorticoid receptor 82.14% 100.00%
CHEMBL5608 Q16288 NT-3 growth factor receptor 82.13% 95.89%
CHEMBL3137262 O60341 LSD1/CoREST complex 81.45% 97.09%
CHEMBL1871 P10275 Androgen Receptor 81.33% 96.43%
CHEMBL1907603 Q05586 Glutamate NMDA receptor; GRIN1/GRIN2B 80.89% 95.89%

Plants that contains it

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Below are displayed all the plants proven (via scientific papers) to contain this compound!
To see more specific details click the taxa you are interested in.
Acorus calamus
Acorus calamus var. angustatus
Acorus gramineus
Agastache rugosa
Aglaia foveolata
Agrimonia pilosa
Artemisia annua
Artemisia argyi
Artemisia capillaris
Artemisia carvifolia
Artemisia montana
Artemisia princeps
Atractylodes lancea
Atropa belladonna
Calea reticulata
Capsicum annuum
Chrysanthemum indicum
Citrus × aurantium
Citrus deliciosa
Citrus maxima
Citrus medica
Citrus trifoliata
Cnidium monnieri
Conioselinum anthriscoides
Conioselinum smithii
Conioselinum tenuissimum
Curcuma kwangsiensis
Curcuma longa
Curcuma phaeocaulis
Curcuma wenyujin
Curcuma zedoaria
Daucus carota
Dendropanax trifidus
Elsholtzia ciliata
Foeniculum vulgare
Glehnia littoralis
Hansenia forbesii
Hansenia weberbaueriana
Humulus lupulus
Hypericum perforatum
Illicium difengpi
Jackiella javanica
Leonurus japonicus
Lessingianthus linearis
Ligusticum officinale
Lindera aggregata
Litsea cubeba
Lonicera japonica
Magnolia obovata
Magnolia officinalis
Mosla chinensis
Murraya exotica
Murraya paniculata
Nepeta tenuifolia
Panax ginseng
Panax quinquefolius
Perilla frutescens
Persicaria bistorta
Piper cubeba
Piper nigrum
Piptolepis leptospermoides
Pleiotaxis rugosa
Prumnopitys andina
Schisandra chinensis
Solidago canadensis
Thymus quinquecostatus
Thymus vulgaris
Torilis japonica
Wurfbainia longiligularis
Wurfbainia villosa
Wurfbainia villosa var. xanthioides
Xanthium strumarium
Zanthoxylum bungeanum
Zanthoxylum schinifolium
Zingiber officinale

Cross-Links

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PubChem 24771782
NPASS NPC218918
LOTUS LTS0068732
wikiData Q27121452