Yamogenin

Details

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Internal ID 9dd30092-7f33-40f1-9142-37eaa6b16937
Taxonomy Lipids and lipid-like molecules > Prenol lipids > Triterpenoids
IUPAC Name (1S,2S,4S,5'S,6R,7S,8R,9S,12S,13R,16S)-5',7,9,13-tetramethylspiro[5-oxapentacyclo[10.8.0.02,9.04,8.013,18]icos-18-ene-6,2'-oxane]-16-ol
SMILES (Canonical) CC1CCC2(C(C3C(O2)CC4C3(CCC5C4CC=C6C5(CCC(C6)O)C)C)C)OC1
SMILES (Isomeric) C[C@H]1CC[C@@]2([C@H]([C@H]3[C@@H](O2)C[C@@H]4[C@@]3(CC[C@H]5[C@H]4CC=C6[C@@]5(CC[C@@H](C6)O)C)C)C)OC1
InChI InChI=1S/C27H42O3/c1-16-7-12-27(29-15-16)17(2)24-23(30-27)14-22-20-6-5-18-13-19(28)8-10-25(18,3)21(20)9-11-26(22,24)4/h5,16-17,19-24,28H,6-15H2,1-4H3/t16-,17-,19-,20+,21-,22-,23-,24-,25-,26-,27+/m0/s1
InChI Key WQLVFSAGQJTQCK-CAKNJAFZSA-N
Popularity 29 references in papers

Physical and Chemical Properties

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Molecular Formula C27H42O3
Molecular Weight 414.60 g/mol
Exact Mass 414.31339520 g/mol
Topological Polar Surface Area (TPSA) 38.70 Ų
XlogP 5.70
Atomic LogP (AlogP) 5.71
H-Bond Acceptor 3
H-Bond Donor 1
Rotatable Bonds 0

Synonyms

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512-06-1
Jamogenin
25-epi-Diosgenin
Neodiosgenin
M487OD4XW3
(25S)-spirost-5-en-3beta-ol
NSC 226132
Spirost-5-en-3-ol, (3beta,25S)-
UNII-M487OD4XW3
CHEBI:10086
There are more than 10 synonyms. If you wish to see them all click here.

2D Structure

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2D Structure of Yamogenin

3D Structure

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ADMET Properties (via admetSAR 2)

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Target Value Probability (raw) Probability (%)
Human Intestinal Absorption + 0.9953 99.53%
Caco-2 + 0.5112 51.12%
Blood Brain Barrier - 0.5000 50.00%
Human oral bioavailability - 0.6143 61.43%
Subcellular localzation Mitochondria 0.7281 72.81%
OATP2B1 inhibitior - 0.7165 71.65%
OATP1B1 inhibitior + 0.9406 94.06%
OATP1B3 inhibitior + 0.9539 95.39%
MATE1 inhibitior - 0.9200 92.00%
OCT2 inhibitior - 0.5602 56.02%
BSEP inhibitior + 0.8805 88.05%
P-glycoprotein inhibitior - 0.5327 53.27%
P-glycoprotein substrate + 0.5867 58.67%
CYP3A4 substrate + 0.7318 73.18%
CYP2C9 substrate - 0.8006 80.06%
CYP2D6 substrate - 0.7501 75.01%
CYP3A4 inhibition - 0.8309 83.09%
CYP2C9 inhibition - 0.8878 88.78%
CYP2C19 inhibition - 0.9127 91.27%
CYP2D6 inhibition - 0.9107 91.07%
CYP1A2 inhibition - 0.8638 86.38%
CYP2C8 inhibition + 0.6966 69.66%
CYP inhibitory promiscuity - 0.9375 93.75%
UGT catelyzed + 0.9000 90.00%
Carcinogenicity (binary) - 0.9900 99.00%
Carcinogenicity (trinary) Non-required 0.5618 56.18%
Eye corrosion - 0.9877 98.77%
Eye irritation - 0.9612 96.12%
Skin irritation - 0.6526 65.26%
Skin corrosion - 0.9494 94.94%
Ames mutagenesis - 0.9900 99.00%
Human Ether-a-go-go-Related Gene inhibition + 0.6618 66.18%
Micronuclear - 0.8700 87.00%
Hepatotoxicity - 0.5875 58.75%
skin sensitisation - 0.7885 78.85%
Respiratory toxicity + 0.7444 74.44%
Reproductive toxicity + 0.8222 82.22%
Mitochondrial toxicity + 0.6125 61.25%
Nephrotoxicity - 0.6152 61.52%
Acute Oral Toxicity (c) IV 0.6146 61.46%
Estrogen receptor binding + 0.8083 80.83%
Androgen receptor binding + 0.7059 70.59%
Thyroid receptor binding + 0.6958 69.58%
Glucocorticoid receptor binding + 0.8474 84.74%
Aromatase binding + 0.7394 73.94%
PPAR gamma + 0.5999 59.99%
Honey bee toxicity - 0.6178 61.78%
Biodegradation - 0.7750 77.50%
Crustacea aquatic toxicity + 0.5600 56.00%
Fish aquatic toxicity + 0.9311 93.11%

Targets

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Proven Targets:

CHEMBL ID UniProt ID Name Min activity Assay type Source
CHEMBL1293224 P10636 Microtubule-associated protein tau 562.3 nM
Potency
via Super-PRED

Predicted Targets (via Super-PRED):

CHEMBL ID UniProt ID Name Probability Model accuracy
CHEMBL3251 P19838 Nuclear factor NF-kappa-B p105 subunit 96.79% 96.09%
CHEMBL1994 P08235 Mineralocorticoid receptor 93.70% 100.00%
CHEMBL3137262 O60341 LSD1/CoREST complex 92.42% 97.09%
CHEMBL5619 P27695 DNA-(apurinic or apyrimidinic site) lyase 92.25% 91.11%
CHEMBL4681 P42330 Aldo-keto-reductase family 1 member C3 90.87% 89.05%
CHEMBL226 P30542 Adenosine A1 receptor 87.64% 95.93%
CHEMBL4803 P29474 Nitric-oxide synthase, endothelial 86.83% 86.00%
CHEMBL1806 P11388 DNA topoisomerase II alpha 85.94% 89.00%
CHEMBL1914 P06276 Butyrylcholinesterase 85.54% 95.00%
CHEMBL5608 Q16288 NT-3 growth factor receptor 83.03% 95.89%
CHEMBL221 P23219 Cyclooxygenase-1 82.68% 90.17%
CHEMBL3359 P21462 Formyl peptide receptor 1 82.49% 93.56%
CHEMBL1907603 Q05586 Glutamate NMDA receptor; GRIN1/GRIN2B 81.94% 95.89%
CHEMBL4203 Q9HAZ1 Dual specificity protein kinase CLK4 81.59% 94.45%
CHEMBL4026 P40763 Signal transducer and activator of transcription 3 81.27% 82.69%
CHEMBL253 P34972 Cannabinoid CB2 receptor 80.42% 97.25%

Cross-Links

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PubChem 441900
NPASS NPC235126
LOTUS LTS0236599
wikiData Q8048088