Rubixanthin

Details

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Internal ID cde836c2-95d2-4c1f-a4e4-45b7eed55d92
Taxonomy Lipids and lipid-like molecules > Prenol lipids > Tetraterpenoids > Carotenoids > Xanthophylls
IUPAC Name (1R)-4-[(1E,3E,5E,7E,9E,11E,13E,15E,17E,19E)-3,7,12,16,20,24-hexamethylpentacosa-1,3,5,7,9,11,13,15,17,19,23-undecaenyl]-3,5,5-trimethylcyclohex-3-en-1-ol
SMILES (Canonical) CC1=C(C(CC(C1)O)(C)C)C=CC(=CC=CC(=CC=CC=C(C)C=CC=C(C)C=CC=C(C)CCC=C(C)C)C)C
SMILES (Isomeric) CC1=C(C(C[C@@H](C1)O)(C)C)/C=C/C(=C/C=C/C(=C/C=C/C=C(\C)/C=C/C=C(\C)/C=C/C=C(\C)/CCC=C(C)C)/C)/C
InChI InChI=1S/C40H56O/c1-31(2)17-13-20-34(5)23-15-25-35(6)24-14-21-32(3)18-11-12-19-33(4)22-16-26-36(7)27-28-39-37(8)29-38(41)30-40(39,9)10/h11-12,14-19,21-28,38,41H,13,20,29-30H2,1-10H3/b12-11+,21-14+,22-16+,25-15+,28-27+,32-18+,33-19+,34-23+,35-24+,36-26+/t38-/m1/s1
InChI Key ABTRFGSPYXCGMR-AXXBKCDFSA-N
Popularity 4 references in papers

Physical and Chemical Properties

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Molecular Formula C40H56O
Molecular Weight 552.90 g/mol
Exact Mass 552.433116406 g/mol
Topological Polar Surface Area (TPSA) 20.20 Ų
XlogP 13.20
Atomic LogP (AlogP) 11.74
H-Bond Acceptor 1
H-Bond Donor 1
Rotatable Bonds 13

Synonyms

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3763-55-1
Natural yellow 27
(3R)-beta-4-Caroten-3-ol
UNII-0PWJ89032Q
(3R)-beta,psi-caroten-3-ol
CI 75135
0PWJ89032Q
beta-4-Caroten-3-ol, (3R)-
.gamma.-Caroten-3-ol, (R)-all-trans-
(1R)-4-[(1E,3E,5E,7E,9E,11E,13E,15E,17E,19E)-3,7,12,16,20,24-hexamethylpentacosa-1,3,5,7,9,11,13,15,17,19,23-undecaenyl]-3,5,5-trimethylcyclohex-3-en-1-ol
There are more than 10 synonyms. If you wish to see them all click here.

2D Structure

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2D Structure of Rubixanthin

3D Structure

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ADMET Properties (via admetSAR 2)

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Target Value Probability (raw) Probability (%)
Human Intestinal Absorption + 0.9954 99.54%
Caco-2 - 0.7562 75.62%
Blood Brain Barrier + 0.7250 72.50%
Human oral bioavailability - 0.6143 61.43%
Subcellular localzation Lysosomes 0.5037 50.37%
OATP2B1 inhibitior - 0.5737 57.37%
OATP1B1 inhibitior + 0.7807 78.07%
OATP1B3 inhibitior + 0.9031 90.31%
MATE1 inhibitior - 0.9800 98.00%
OCT2 inhibitior - 0.8250 82.50%
BSEP inhibitior + 1.0000 100.00%
P-glycoprotein inhibitior + 0.8370 83.70%
P-glycoprotein substrate - 0.6468 64.68%
CYP3A4 substrate + 0.6409 64.09%
CYP2C9 substrate - 1.0000 100.00%
CYP2D6 substrate - 0.7617 76.17%
CYP3A4 inhibition - 0.8764 87.64%
CYP2C9 inhibition - 0.9145 91.45%
CYP2C19 inhibition - 0.9126 91.26%
CYP2D6 inhibition - 0.9360 93.60%
CYP1A2 inhibition - 0.8914 89.14%
CYP2C8 inhibition - 0.6412 64.12%
CYP inhibitory promiscuity - 0.8463 84.63%
UGT catelyzed + 0.9000 90.00%
Carcinogenicity (binary) - 0.7828 78.28%
Carcinogenicity (trinary) Non-required 0.6616 66.16%
Eye corrosion - 0.9393 93.93%
Eye irritation - 0.9172 91.72%
Skin irritation + 0.7677 76.77%
Skin corrosion - 0.9424 94.24%
Ames mutagenesis - 0.6645 66.45%
Human Ether-a-go-go-Related Gene inhibition + 0.9348 93.48%
Micronuclear - 1.0000 100.00%
Hepatotoxicity - 0.7308 73.08%
skin sensitisation + 0.9246 92.46%
Respiratory toxicity + 0.6222 62.22%
Reproductive toxicity + 0.5667 56.67%
Mitochondrial toxicity - 0.6875 68.75%
Nephrotoxicity + 0.7287 72.87%
Acute Oral Toxicity (c) III 0.8795 87.95%
Estrogen receptor binding + 0.8596 85.96%
Androgen receptor binding + 0.7601 76.01%
Thyroid receptor binding + 0.7501 75.01%
Glucocorticoid receptor binding + 0.6509 65.09%
Aromatase binding - 0.6613 66.13%
PPAR gamma + 0.7393 73.93%
Honey bee toxicity - 0.8298 82.98%
Biodegradation - 0.9750 97.50%
Crustacea aquatic toxicity + 0.6100 61.00%
Fish aquatic toxicity + 0.8939 89.39%

Targets

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Proven Targets:

CHEMBL ID UniProt ID Name Min activity Assay type Source
No proven targets yet!

Predicted Targets (via Super-PRED):

CHEMBL ID UniProt ID Name Probability Model accuracy
CHEMBL3251 P19838 Nuclear factor NF-kappa-B p105 subunit 95.04% 96.09%
CHEMBL5619 P27695 DNA-(apurinic or apyrimidinic site) lyase 94.89% 91.11%
CHEMBL221 P23219 Cyclooxygenase-1 90.83% 90.17%
CHEMBL1937 Q92769 Histone deacetylase 2 86.89% 94.75%
CHEMBL2581 P07339 Cathepsin D 85.56% 98.95%
CHEMBL1870 P28702 Retinoid X receptor beta 84.93% 95.00%
CHEMBL1293249 Q13887 Kruppel-like factor 5 84.39% 86.33%
CHEMBL5608 Q16288 NT-3 growth factor receptor 83.13% 95.89%
CHEMBL4203 Q9HAZ1 Dual specificity protein kinase CLK4 83.07% 94.45%
CHEMBL1994 P08235 Mineralocorticoid receptor 82.56% 100.00%
CHEMBL241 Q14432 Phosphodiesterase 3A 82.35% 92.94%
CHEMBL2004 P48443 Retinoid X receptor gamma 81.92% 100.00%
CHEMBL2288 Q13526 Peptidyl-prolyl cis-trans isomerase NIMA-interacting 1 81.00% 91.71%

Plants that contains it

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Below are displayed all the plants proven (via scientific papers) to contain this compound!
To see more specific details click the taxa you are interested in.
Aconitum maximum
Aconitum vilmorinianum
Actinidia kolomikta
Agnorhiza bolanderi
Anaxagorea crassipetala
Araujia sericifera
Arnica nevadensis
Artemisia gmelinii
Beyeria sulcata var. brevipes
Boronia koniambiensis
Bursaria spinosa
Calendula officinalis
Canarium strictum
Carica papaya
Celastrus orbiculatus
Chloranthus tianmushanensis
Chromolaena odorata
Chromolaena pulchella
Citrus × aurantium
Coreopsis grandiflora
Craibia grandiflora
Dendrosenecio kilimanjari
Dipterocarpus alatus
Dipteronia dyeriana
Dodonaea polyandra
Drosera peltata
Echinops amplexicaulis
Ficus formosana
Garcinia macrophylla
Gardenia fosbergii
Gymnanthemum amygdalinum
Gymnosporia serrata
Helianthus annuus
Ilex affinis
Isodon umbrosus
Kaempferia pulchra
Litogyne gariepina
Maytenus loeseneri
Murraya kwangsiensis
Odixia angusta
Odontites vulgaris
Ongokea gore
Ophiorrhiza blumeana
Peucedanum palustre
Phalaenopsis aphrodite
Physalis solanaceus
Plectranthus mollis
Podocarpus salignus
Prosopis glandulosa
Prosopis ruscifolia
Prunus armeniaca
Prunus laurocerasus
Psidium guajava
Psychotria bahiensis
Pteris plumieri
Quercus cerris
Rosa canina
Rosa rugosa
Rosa villosa
Rubia cordifolia
Rubus chamaemorus
Salvia officinalis
Schistostephium rotundifolium
Senecio squalidus
Seriphidium cinum
Sesbania punicea
Sideritis syriaca
Simira eliezeriana
Siphocampylus verticillatus
Sorbus pallescens
Stenostomum lucidum
Taxodium huegelii
Trifolium repens
Vepris pilosa
Veratrum shanense
Viburnum chingii
Vitex madiensis
Zanthoxylum melanostictum

Cross-Links

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PubChem 5281252
NPASS NPC222781
LOTUS LTS0040991
wikiData Q2063702