Procyanidin B5

Details

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Internal ID 101d6142-8b8f-45ee-a64e-ef6aa94b1af7
Taxonomy Phenylpropanoids and polyketides > Flavonoids > Biflavonoids and polyflavonoids
IUPAC Name (2R,3R)-2-(3,4-dihydroxyphenyl)-6-[(2R,3R,4S)-2-(3,4-dihydroxyphenyl)-3,5,7-trihydroxy-3,4-dihydro-2H-chromen-4-yl]-3,4-dihydro-2H-chromene-3,5,7-triol
SMILES (Canonical) C1C(C(OC2=C1C(=C(C(=C2)O)C3C(C(OC4=CC(=CC(=C34)O)O)C5=CC(=C(C=C5)O)O)O)O)C6=CC(=C(C=C6)O)O)O
SMILES (Isomeric) C1[C@H]([C@H](OC2=C1C(=C(C(=C2)O)[C@@H]3[C@H]([C@H](OC4=CC(=CC(=C34)O)O)C5=CC(=C(C=C5)O)O)O)O)C6=CC(=C(C=C6)O)O)O
InChI InChI=1S/C30H26O12/c31-13-7-19(36)24-23(8-13)42-30(12-2-4-16(33)18(35)6-12)28(40)26(24)25-20(37)10-22-14(27(25)39)9-21(38)29(41-22)11-1-3-15(32)17(34)5-11/h1-8,10,21,26,28-40H,9H2/t21-,26-,28-,29-,30-/m1/s1
InChI Key GMISZFQPFDAPGI-CVJZBMGUSA-N
Popularity 8 references in papers

Physical and Chemical Properties

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Molecular Formula C30H26O12
Molecular Weight 578.50 g/mol
Exact Mass 578.14242626 g/mol
Topological Polar Surface Area (TPSA) 221.00 Ų
XlogP 2.40
Atomic LogP (AlogP) 3.00
H-Bond Acceptor 12
H-Bond Donor 10
Rotatable Bonds 3

Synonyms

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Procyanidol B5
12798-57-1
Proanthocyanidin B5
UNII-W51N19H6K6
BRN 3586526
Procyanidin dimer B5
PROCYANIDINB5
CHEBI:75621
W51N19H6K6
Epicatechin(4b->6)epicatechin
There are more than 10 synonyms. If you wish to see them all click here.

2D Structure

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2D Structure of Procyanidin B5

3D Structure

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ADMET Properties (via admetSAR 2)

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Target Value Probability (raw) Probability (%)
Human Intestinal Absorption + 0.8698 86.98%
Caco-2 - 0.9156 91.56%
Blood Brain Barrier - 0.7000 70.00%
Human oral bioavailability - 0.8000 80.00%
Subcellular localzation Mitochondria 0.4793 47.93%
OATP2B1 inhibitior - 0.5597 55.97%
OATP1B1 inhibitior + 0.9193 91.93%
OATP1B3 inhibitior + 0.9459 94.59%
MATE1 inhibitior - 0.9600 96.00%
OCT2 inhibitior - 0.8750 87.50%
BSEP inhibitior + 0.8234 82.34%
P-glycoprotein inhibitior + 0.6662 66.62%
P-glycoprotein substrate - 0.8403 84.03%
CYP3A4 substrate + 0.5553 55.53%
CYP2C9 substrate - 0.5994 59.94%
CYP2D6 substrate + 0.5264 52.64%
CYP3A4 inhibition - 0.8309 83.09%
CYP2C9 inhibition - 0.9071 90.71%
CYP2C19 inhibition - 0.9026 90.26%
CYP2D6 inhibition - 0.9231 92.31%
CYP1A2 inhibition - 0.9155 91.55%
CYP2C8 inhibition + 0.6862 68.62%
CYP inhibitory promiscuity - 0.8625 86.25%
UGT catelyzed + 0.8000 80.00%
Carcinogenicity (binary) - 0.9800 98.00%
Carcinogenicity (trinary) Non-required 0.6139 61.39%
Eye corrosion - 0.9904 99.04%
Eye irritation - 0.8369 83.69%
Skin irritation - 0.6044 60.44%
Skin corrosion - 0.9317 93.17%
Ames mutagenesis + 0.6500 65.00%
Human Ether-a-go-go-Related Gene inhibition + 0.8518 85.18%
Micronuclear + 0.7859 78.59%
Hepatotoxicity - 0.7250 72.50%
skin sensitisation - 0.7665 76.65%
Respiratory toxicity + 0.6444 64.44%
Reproductive toxicity + 0.8000 80.00%
Mitochondrial toxicity + 0.6000 60.00%
Nephrotoxicity - 0.7396 73.96%
Acute Oral Toxicity (c) IV 0.5696 56.96%
Estrogen receptor binding + 0.7500 75.00%
Androgen receptor binding + 0.7495 74.95%
Thyroid receptor binding + 0.6228 62.28%
Glucocorticoid receptor binding + 0.5991 59.91%
Aromatase binding - 0.5573 55.73%
PPAR gamma + 0.7218 72.18%
Honey bee toxicity - 0.8002 80.02%
Biodegradation - 0.8000 80.00%
Crustacea aquatic toxicity + 0.5400 54.00%
Fish aquatic toxicity + 0.6855 68.55%

Targets

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Proven Targets:

CHEMBL ID UniProt ID Name Min activity Assay type Source
No proven targets yet!

Predicted Targets (via Super-PRED):

CHEMBL ID UniProt ID Name Probability Model accuracy
CHEMBL5619 P27695 DNA-(apurinic or apyrimidinic site) lyase 99.73% 91.11%
CHEMBL1951 P21397 Monoamine oxidase A 99.31% 91.49%
CHEMBL3251 P19838 Nuclear factor NF-kappa-B p105 subunit 94.63% 96.09%
CHEMBL3137262 O60341 LSD1/CoREST complex 91.33% 97.09%
CHEMBL1806 P11388 DNA topoisomerase II alpha 90.41% 89.00%
CHEMBL1860 P10827 Thyroid hormone receptor alpha 89.66% 99.15%
CHEMBL1929 P47989 Xanthine dehydrogenase 85.70% 96.12%
CHEMBL3108638 O15164 Transcription intermediary factor 1-alpha 85.49% 95.56%
CHEMBL4040 P28482 MAP kinase ERK2 83.22% 83.82%
CHEMBL2535 P11166 Glucose transporter 83.12% 98.75%
CHEMBL3194 P02766 Transthyretin 82.79% 90.71%
CHEMBL4208 P20618 Proteasome component C5 82.52% 90.00%
CHEMBL5608 Q16288 NT-3 growth factor receptor 82.26% 95.89%
CHEMBL3004 P33527 Multidrug resistance-associated protein 1 81.97% 96.37%
CHEMBL3401 O75469 Pregnane X receptor 81.79% 94.73%
CHEMBL2581 P07339 Cathepsin D 80.03% 98.95%

Plants that contains it

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Below are displayed all the plants proven (via scientific papers) to contain this compound!
To see more specific details click the taxa you are interested in.
Acacia adunca
Aconitum liangshanicum
Aconitum sachalinense
Adiantum philippense
Aesculus hippocastanum
Ageratina gracilis
Aldama incana
Alstonia deplanchei
Annona cornifolia
Artemisia pedemontana subsp. assoana
Aster bellidiastrum
Asteriscus graveolens
Astragalus sempervirens
Baccharis megapotamica
Calostephane divaricata
Caragana aurantiaca
Caragana halodendron
Centrosema pascuorum
Ceratozamia fuscoviridis
Chaenomeles sinensis
Cinchona pubescens
Cinnamomum bejolghota
Cinnamomum sieboldii
Citrus glauca
Crataegus monogyna
Crataegus pinnatifida
Crataegus sinaica
Critonia quadrangularis
Davallia divaricata
Dioscorea cirrhosa
Dolomiaea souliei
Dumortiera hirsuta
Echeveria secunda
Eucalyptus camaldulensis
Eucalyptus melliodora
Ficus simplicissima
Flemingia macrophylla
Garcinia mangostana
Gnetum latifolium
Goniothalamus malayanus
Guazuma ulmifolia
Gynura bicolor
Haplophyllum dauricum
Hedysarum inundatum
Hypericum laricifolium
Ipomoea digitata
Lepisorus ussuriensis
Ligularia vellerea
Lonicera hypoleuca
Lysimachia mauritiana
Marrubium anisodon
Marrubium supinum
Metalasia capitata
Naucleopsis ternstroemiiflora
Nelia pillansii
Nicotiana sylvestris
Ocotea pittieri
Orthosphenia mexicana
Oxyanthus speciosus
Pastinaca sativa
Peltostigma guatemalense
Premna odorata
Quercus dentata
Rauvolfia vomitoria
Rheum tanguticum
Rhodanthe chlorocephala subsp. rosea
Rhynchopsidium pumilum
Rumex acetosa
Rumex maritimus
Salvia syriaca
Scutellaria amoena
Senecio latifolius
Senecio peripotamus
Serpocaulon triseriale
Solanum elaeagnifolium
Solanum laxum
Stevia mercedensis
Strychnos tabascana
Styrax hookeri
Swertia franchetiana
Swinglea glutinosa
Theobroma cacao
Thuja standishii
Vaccinium oxycoccos
Verbesina rupestris
Vitis vinifera
Wikstroemia retusa
Zanthoxylum tetraspermum

Cross-Links

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PubChem 124017
NPASS NPC294558
ChEMBL CHEMBL506487
LOTUS LTS0103163
wikiData Q7247557