Rhapontin

Details

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Internal ID ff22fc0f-e2f9-47ce-a3bb-3ac5f3499b8b
Taxonomy Phenylpropanoids and polyketides > Stilbenes > Stilbene glycosides
IUPAC Name (2S,3R,4S,5S,6R)-2-[3-hydroxy-5-[(E)-2-(3-hydroxy-4-methoxyphenyl)ethenyl]phenoxy]-6-(hydroxymethyl)oxane-3,4,5-triol
SMILES (Canonical) COC1=C(C=C(C=C1)C=CC2=CC(=CC(=C2)OC3C(C(C(C(O3)CO)O)O)O)O)O
SMILES (Isomeric) COC1=C(C=C(C=C1)/C=C/C2=CC(=CC(=C2)O[C@H]3[C@@H]([C@H]([C@@H]([C@H](O3)CO)O)O)O)O)O
InChI InChI=1S/C21H24O9/c1-28-16-5-4-11(8-15(16)24)2-3-12-6-13(23)9-14(7-12)29-21-20(27)19(26)18(25)17(10-22)30-21/h2-9,17-27H,10H2,1H3/b3-2+/t17-,18-,19+,20-,21-/m1/s1
InChI Key GKAJCVFOJGXVIA-DXKBKAGUSA-N
Popularity 97 references in papers

Physical and Chemical Properties

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Molecular Formula C21H24O9
Molecular Weight 420.40 g/mol
Exact Mass 420.14203234 g/mol
Topological Polar Surface Area (TPSA) 149.00 Ų
XlogP 0.50
Atomic LogP (AlogP) 0.46
H-Bond Acceptor 9
H-Bond Donor 6
Rotatable Bonds 6

Synonyms

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Rhaponticin
155-58-8
Ponticin
Rhaponiticin
Rhaponticine
NSC 43321
UNII-K691M2Z08V
CHEBI:8824
K691M2Z08V
EINECS 205-845-0
There are more than 10 synonyms. If you wish to see them all click here.

2D Structure

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2D Structure of Rhapontin

3D Structure

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ADMET Properties (via admetSAR 2)

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Target Value Probability (raw) Probability (%)
Human Intestinal Absorption - 0.7134 71.34%
Caco-2 - 0.8466 84.66%
Blood Brain Barrier - 0.5250 52.50%
Human oral bioavailability - 0.6857 68.57%
Subcellular localzation Mitochondria 0.5554 55.54%
OATP2B1 inhibitior - 0.5676 56.76%
OATP1B1 inhibitior + 0.9414 94.14%
OATP1B3 inhibitior + 0.9764 97.64%
MATE1 inhibitior - 0.9600 96.00%
OCT2 inhibitior - 0.7750 77.50%
BSEP inhibitior - 0.5926 59.26%
P-glycoprotein inhibitior - 0.7669 76.69%
P-glycoprotein substrate - 0.8639 86.39%
CYP3A4 substrate + 0.5388 53.88%
CYP2C9 substrate - 0.6100 61.00%
CYP2D6 substrate - 0.8073 80.73%
CYP3A4 inhibition - 0.8070 80.70%
CYP2C9 inhibition - 0.8461 84.61%
CYP2C19 inhibition - 0.7952 79.52%
CYP2D6 inhibition - 0.8974 89.74%
CYP1A2 inhibition - 0.8653 86.53%
CYP2C8 inhibition + 0.6272 62.72%
CYP inhibitory promiscuity - 0.5322 53.22%
UGT catelyzed + 0.8000 80.00%
Carcinogenicity (binary) - 0.9700 97.00%
Carcinogenicity (trinary) Non-required 0.6862 68.62%
Eye corrosion - 0.9910 99.10%
Eye irritation - 0.8860 88.60%
Skin irritation - 0.8375 83.75%
Skin corrosion - 0.9473 94.73%
Ames mutagenesis - 0.6800 68.00%
Human Ether-a-go-go-Related Gene inhibition + 0.7336 73.36%
Micronuclear + 0.5759 57.59%
Hepatotoxicity - 0.8675 86.75%
skin sensitisation - 0.8384 83.84%
Respiratory toxicity - 0.7778 77.78%
Reproductive toxicity + 0.6111 61.11%
Mitochondrial toxicity - 0.7125 71.25%
Nephrotoxicity - 0.7176 71.76%
Acute Oral Toxicity (c) III 0.7605 76.05%
Estrogen receptor binding + 0.5970 59.70%
Androgen receptor binding - 0.5999 59.99%
Thyroid receptor binding + 0.6611 66.11%
Glucocorticoid receptor binding - 0.5474 54.74%
Aromatase binding + 0.5988 59.88%
PPAR gamma + 0.6841 68.41%
Honey bee toxicity - 0.7845 78.45%
Biodegradation - 0.8250 82.50%
Crustacea aquatic toxicity - 0.5900 59.00%
Fish aquatic toxicity + 0.7719 77.19%

Targets

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Proven Targets:

CHEMBL ID UniProt ID Name Min activity Assay type Source
No proven targets yet!

Predicted Targets (via Super-PRED):

CHEMBL ID UniProt ID Name Probability Model accuracy
CHEMBL5619 P27695 DNA-(apurinic or apyrimidinic site) lyase 98.71% 91.11%
CHEMBL1075094 Q16236 Nuclear factor erythroid 2-related factor 2 96.68% 96.00%
CHEMBL3251 P19838 Nuclear factor NF-kappa-B p105 subunit 95.27% 96.09%
CHEMBL3194 P02766 Transthyretin 93.73% 90.71%
CHEMBL1293249 Q13887 Kruppel-like factor 5 93.17% 86.33%
CHEMBL3108638 O15164 Transcription intermediary factor 1-alpha 90.85% 95.56%
CHEMBL1806 P11388 DNA topoisomerase II alpha 90.10% 89.00%
CHEMBL3401 O75469 Pregnane X receptor 89.92% 94.73%
CHEMBL3060 Q9Y345 Glycine transporter 2 89.04% 99.17%
CHEMBL2581 P07339 Cathepsin D 87.86% 98.95%
CHEMBL4016 P42262 Glutamate receptor ionotropic, AMPA 2 87.64% 86.92%
CHEMBL5608 Q16288 NT-3 growth factor receptor 86.96% 95.89%
CHEMBL225 P28335 Serotonin 2c (5-HT2c) receptor 85.73% 89.62%
CHEMBL1951 P21397 Monoamine oxidase A 84.21% 91.49%
CHEMBL3137262 O60341 LSD1/CoREST complex 81.37% 97.09%
CHEMBL1907603 Q05586 Glutamate NMDA receptor; GRIN1/GRIN2B 80.93% 95.89%
CHEMBL4208 P20618 Proteasome component C5 80.55% 90.00%

Cross-Links

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PubChem 637213
NPASS NPC98777
ChEMBL CHEMBL109266
LOTUS LTS0071349
wikiData Q7320229