Plumbagin

Details

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Internal ID 6f5ff01c-8e8f-4d96-819c-adf21539a2b9
Taxonomy Benzenoids > Naphthalenes > Naphthoquinones
IUPAC Name 5-hydroxy-2-methylnaphthalene-1,4-dione
SMILES (Canonical) CC1=CC(=O)C2=C(C1=O)C=CC=C2O
SMILES (Isomeric) CC1=CC(=O)C2=C(C1=O)C=CC=C2O
InChI InChI=1S/C11H8O3/c1-6-5-9(13)10-7(11(6)14)3-2-4-8(10)12/h2-5,12H,1H3
InChI Key VCMMXZQDRFWYSE-UHFFFAOYSA-N
Popularity 1,595 references in papers

Physical and Chemical Properties

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Molecular Formula C11H8O3
Molecular Weight 188.18 g/mol
Exact Mass 188.047344113 g/mol
Topological Polar Surface Area (TPSA) 54.40 Ų
XlogP 2.30
Atomic LogP (AlogP) 1.72
H-Bond Acceptor 3
H-Bond Donor 1
Rotatable Bonds 0

Synonyms

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481-42-5
Plumbagine
2-Methyljuglone
5-Hydroxy-2-methyl-1,4-naphthoquinone
Plumbaein
5-hydroxy-2-methylnaphthalene-1,4-dione
Plumbagone
5-Hydroxy-2-methyl-1,4-naphthalenedione
1,4-Naphthalenedione, 5-hydroxy-2-methyl-
5-Hydroxy-2-methyl-[1,4]naphthoquinone
There are more than 10 synonyms. If you wish to see them all click here.

2D Structure

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2D Structure of Plumbagin

3D Structure

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ADMET Properties (via admetSAR 2)

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Target Value Probability (raw) Probability (%)
Human Intestinal Absorption + 1.0000 100.00%
Caco-2 + 0.7146 71.46%
Blood Brain Barrier - 0.7250 72.50%
Human oral bioavailability + 0.8000 80.00%
Subcellular localzation Mitochondria 0.8798 87.98%
OATP2B1 inhibitior - 1.0000 100.00%
OATP1B1 inhibitior + 0.9343 93.43%
OATP1B3 inhibitior + 0.9776 97.76%
MATE1 inhibitior - 0.8600 86.00%
OCT2 inhibitior - 1.0000 100.00%
BSEP inhibitior - 0.9370 93.70%
P-glycoprotein inhibitior - 0.9681 96.81%
P-glycoprotein substrate - 0.9362 93.62%
CYP3A4 substrate - 0.5681 56.81%
CYP2C9 substrate - 0.8093 80.93%
CYP2D6 substrate - 0.8659 86.59%
CYP3A4 inhibition - 0.8351 83.51%
CYP2C9 inhibition + 0.8504 85.04%
CYP2C19 inhibition + 0.5513 55.13%
CYP2D6 inhibition - 0.7826 78.26%
CYP1A2 inhibition + 0.9504 95.04%
CYP2C8 inhibition - 0.9375 93.75%
CYP inhibitory promiscuity + 0.7349 73.49%
UGT catelyzed + 0.8000 80.00%
Carcinogenicity (binary) - 0.7906 79.06%
Carcinogenicity (trinary) Non-required 0.4831 48.31%
Eye corrosion - 0.9783 97.83%
Eye irritation + 0.9889 98.89%
Skin irritation + 0.7111 71.11%
Skin corrosion - 0.9239 92.39%
Ames mutagenesis + 0.9300 93.00%
Human Ether-a-go-go-Related Gene inhibition - 0.8297 82.97%
Micronuclear + 0.6808 68.08%
Hepatotoxicity + 0.8750 87.50%
skin sensitisation + 0.7017 70.17%
Respiratory toxicity - 0.5333 53.33%
Reproductive toxicity + 0.6667 66.67%
Mitochondrial toxicity + 0.5875 58.75%
Nephrotoxicity + 0.7840 78.40%
Acute Oral Toxicity (c) II 0.7316 73.16%
Estrogen receptor binding - 0.6106 61.06%
Androgen receptor binding + 0.5201 52.01%
Thyroid receptor binding - 0.7610 76.10%
Glucocorticoid receptor binding - 0.6010 60.10%
Aromatase binding - 0.7563 75.63%
PPAR gamma - 0.7221 72.21%
Honey bee toxicity - 0.9553 95.53%
Biodegradation - 0.5250 52.50%
Crustacea aquatic toxicity - 0.6500 65.00%
Fish aquatic toxicity + 0.9911 99.11%

Targets

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Proven Targets:

CHEMBL ID UniProt ID Name Min activity Assay type Source
CHEMBL1293255 P15428 15-hydroxyprostaglandin dehydrogenase [NAD+] 25118.9 nM
Potency
via CMAUP
CHEMBL3577 P00352 Aldehyde dehydrogenase 1A1 15848.9 nM
39810.7 nM
Potency
Potency
via CMAUP
via CMAUP
CHEMBL2903 P16050 Arachidonate 15-lipoxygenase 3162.3 nM
Potency
via CMAUP
CHEMBL1293236 P46063 ATP-dependent DNA helicase Q1 22387.2 nM
Potency
via CMAUP
CHEMBL1293237 P54132 Bloom syndrome protein 31622.8 nM
Potency
via CMAUP
CHEMBL4801 P29466 Caspase-1 12589.3 nM
31622.8 nM
Potency
Potency
via CMAUP
via CMAUP
CHEMBL3468 P55210 Caspase-7 19952.6 nM
Potency
via CMAUP
CHEMBL4096 P04637 Cellular tumor antigen p53 794.3 nM
794.3 nM
6309.6 nM
3981.1 nM
10000 nM
Potency
Potency
Potency
Potency
Potency
via Super-PRED
via CMAUP
via CMAUP
via CMAUP
via CMAUP
CHEMBL340 P08684 Cytochrome P450 3A4 31622.8 nM
31622.8 nM
Potency
Potency
via CMAUP
via CMAUP
CHEMBL3587 Q02750 Dual specificity mitogen-activated protein kinase kinase 1 12589.3 nM
Potency
via CMAUP
CHEMBL3775 P30304 Dual specificity phosphatase Cdc25A 700 nM
IC50
via Super-PRED
CHEMBL4159 Q99714 Endoplasmic reticulum-associated amyloid beta-peptide-binding protein 39810.7 nM
12589.3 nM
Potency
Potency
via CMAUP
via CMAUP
CHEMBL3784 Q09472 Histone acetyltransferase p300 2000 nM
2000 nM
IC50
IC50
DOI: 10.1039/C1MD00199J
PMID: 26701186
CHEMBL5500 Q92831 Histone acetyltransferase PCAF 50000 nM
IC50
PMID: 26701186
CHEMBL1293226 B2RXH2 Lysine-specific demethylase 4D-like 6309.6 nM
8912.5 nM
Potency
Potency
via CMAUP
via CMAUP
CHEMBL4040 P28482 MAP kinase ERK2 5623.4 nM
10000 nM
7079.5 nM
Potency
Potency
Potency
via CMAUP
via CMAUP
via CMAUP
CHEMBL1293224 P10636 Microtubule-associated protein tau 3162.3 nM
562.3 nM
631 nM
2511.9 nM
562.3 nM
891.3 nM
2238.7 nM
Potency
Potency
Potency
Potency
Potency
Potency
Potency
via CMAUP
via Super-PRED
via CMAUP
via CMAUP
via CMAUP
via CMAUP
via CMAUP
CHEMBL1824 P04626 Receptor protein-tyrosine kinase erbB-2 30800 nM
IC50
PMID: 24355130
CHEMBL1293232 Q16637 Survival motor neuron protein 28183.8 nM
Potency
via CMAUP
CHEMBL6007 O75762 Transient receptor potential cation channel subfamily A member 1 460 nM
EC50
via Super-PRED
CHEMBL1075138 Q9NUW8 Tyrosyl-DNA phosphodiesterase 1 39810.7 nM
Potency
via CMAUP

Predicted Targets (via Super-PRED):

CHEMBL ID UniProt ID Name Probability Model accuracy
CHEMBL2581 P07339 Cathepsin D 97.89% 98.95%
CHEMBL3108638 O15164 Transcription intermediary factor 1-alpha 97.40% 95.56%
CHEMBL1951 P21397 Monoamine oxidase A 90.92% 91.49%
CHEMBL3038477 P67870 Casein kinase II alpha/beta 90.50% 99.23%
CHEMBL1937 Q92769 Histone deacetylase 2 89.34% 94.75%
CHEMBL3401 O75469 Pregnane X receptor 88.58% 94.73%
CHEMBL2378 P30307 Dual specificity phosphatase Cdc25C 87.44% 96.67%
CHEMBL1806 P11388 DNA topoisomerase II alpha 85.94% 89.00%
CHEMBL1907600 Q00535 Cyclin-dependent kinase 5/CDK5 activator 1 85.01% 93.03%
CHEMBL1860 P10827 Thyroid hormone receptor alpha 84.43% 99.15%

Cross-Links

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PubChem 10205
NPASS NPC285829
ChEMBL CHEMBL295316
LOTUS LTS0212929
wikiData Q2550553