Pimpinellin

Details

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Internal ID 63165828-9109-49be-8cd4-8ad45141b4a7
Taxonomy Phenylpropanoids and polyketides > Coumarins and derivatives > Furanocoumarins > Angular furanocoumarins
IUPAC Name 5,6-dimethoxyfuro[2,3-h]chromen-2-one
SMILES (Canonical) COC1=C(C2=C(C=CO2)C3=C1C=CC(=O)O3)OC
SMILES (Isomeric) COC1=C(C2=C(C=CO2)C3=C1C=CC(=O)O3)OC
InChI InChI=1S/C13H10O5/c1-15-11-7-3-4-9(14)18-10(7)8-5-6-17-12(8)13(11)16-2/h3-6H,1-2H3
InChI Key BQPRWZCEKZLBHL-UHFFFAOYSA-N
Popularity 181 references in papers

Physical and Chemical Properties

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Molecular Formula C13H10O5
Molecular Weight 246.21 g/mol
Exact Mass 246.05282342 g/mol
Topological Polar Surface Area (TPSA) 57.90 Ų
XlogP 2.30
Atomic LogP (AlogP) 2.56
H-Bond Acceptor 5
H-Bond Donor 0
Rotatable Bonds 2

Synonyms

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131-12-4
5,6-Dimethoxy-2H-furo[2,3-H]chromen-2-one
5,6-dimethoxyfuro[2,3-h]chromen-2-one
Pimpinecilin
Pimpinelline
CCRIS 4344
6,7-Dimethoxyangelicin
UNII-D419UK1B4L
2H-Furo(2,3-h)-1-benzopyran-2-one, 5,6-dimethoxy-
CHEBI:8213
There are more than 10 synonyms. If you wish to see them all click here.

2D Structure

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2D Structure of Pimpinellin

3D Structure

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ADMET Properties (via admetSAR 2)

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Target Value Probability (raw) Probability (%)
Human Intestinal Absorption + 0.9857 98.57%
Caco-2 - 0.5512 55.12%
Blood Brain Barrier + 0.5500 55.00%
Human oral bioavailability + 0.6143 61.43%
Subcellular localzation Mitochondria 0.6582 65.82%
OATP2B1 inhibitior - 1.0000 100.00%
OATP1B1 inhibitior + 0.9571 95.71%
OATP1B3 inhibitior + 0.9480 94.80%
MATE1 inhibitior - 0.9200 92.00%
OCT2 inhibitior - 1.0000 100.00%
BSEP inhibitior - 0.8168 81.68%
P-glycoprotein inhibitior - 0.7754 77.54%
P-glycoprotein substrate - 0.9311 93.11%
CYP3A4 substrate - 0.6174 61.74%
CYP2C9 substrate - 1.0000 100.00%
CYP2D6 substrate - 0.8151 81.51%
CYP3A4 inhibition + 0.7206 72.06%
CYP2C9 inhibition - 0.6599 65.99%
CYP2C19 inhibition + 0.9452 94.52%
CYP2D6 inhibition + 0.5728 57.28%
CYP1A2 inhibition + 0.9499 94.99%
CYP2C8 inhibition - 0.8078 80.78%
CYP inhibitory promiscuity + 0.8133 81.33%
UGT catelyzed - 0.0000 0.00%
Carcinogenicity (binary) - 0.9900 99.00%
Carcinogenicity (trinary) Non-required 0.3731 37.31%
Eye corrosion - 0.9600 96.00%
Eye irritation - 0.5951 59.51%
Skin irritation - 0.6975 69.75%
Skin corrosion - 0.9780 97.80%
Ames mutagenesis - 0.9200 92.00%
Human Ether-a-go-go-Related Gene inhibition - 0.5000 50.00%
Micronuclear + 0.8200 82.00%
Hepatotoxicity + 0.7823 78.23%
skin sensitisation - 0.7841 78.41%
Respiratory toxicity - 0.5444 54.44%
Reproductive toxicity + 0.8889 88.89%
Mitochondrial toxicity + 0.5750 57.50%
Nephrotoxicity - 0.7046 70.46%
Acute Oral Toxicity (c) II 0.5601 56.01%
Estrogen receptor binding + 0.7968 79.68%
Androgen receptor binding + 0.6813 68.13%
Thyroid receptor binding - 0.6101 61.01%
Glucocorticoid receptor binding + 0.7385 73.85%
Aromatase binding + 0.7703 77.03%
PPAR gamma + 0.6322 63.22%
Honey bee toxicity - 0.9021 90.21%
Biodegradation - 0.7750 77.50%
Crustacea aquatic toxicity - 0.5500 55.00%
Fish aquatic toxicity + 0.9426 94.26%

Targets

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Proven Targets:

CHEMBL ID UniProt ID Name Min activity Assay type Source
CHEMBL3577 P00352 Aldehyde dehydrogenase 1A1 44668.4 nM
Potency
via CMAUP
CHEMBL2903 P16050 Arachidonate 15-lipoxygenase 12589.3 nM
Potency
via CMAUP
CHEMBL340 P08684 Cytochrome P450 3A4 10000 nM
10000 nM
Potency
Potency
via CMAUP
via CMAUP

Predicted Targets (via Super-PRED):

CHEMBL ID UniProt ID Name Probability Model accuracy
CHEMBL5619 P27695 DNA-(apurinic or apyrimidinic site) lyase 93.89% 91.11%
CHEMBL2635 P51452 Dual specificity protein phosphatase 3 90.94% 94.00%
CHEMBL3108638 O15164 Transcription intermediary factor 1-alpha 90.86% 95.56%
CHEMBL4306 P22460 Voltage-gated potassium channel subunit Kv1.5 90.86% 94.03%
CHEMBL2581 P07339 Cathepsin D 90.77% 98.95%
CHEMBL4203 Q9HAZ1 Dual specificity protein kinase CLK4 90.50% 94.45%
CHEMBL3038477 P67870 Casein kinase II alpha/beta 84.04% 99.23%
CHEMBL3401 O75469 Pregnane X receptor 80.22% 94.73%

Cross-Links

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PubChem 4825
NPASS NPC78612
ChEMBL CHEMBL1491809
LOTUS LTS0034466
wikiData Q3905067