Indole

Details

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Internal ID 2aba6366-4ae8-41aa-81fb-1f7ab8f8d738
Taxonomy Organoheterocyclic compounds > Indoles and derivatives > Indoles
IUPAC Name 1H-indole
SMILES (Canonical) C1=CC=C2C(=C1)C=CN2
SMILES (Isomeric) C1=CC=C2C(=C1)C=CN2
InChI InChI=1S/C8H7N/c1-2-4-8-7(3-1)5-6-9-8/h1-6,9H
InChI Key SIKJAQJRHWYJAI-UHFFFAOYSA-N
Popularity 33,976 references in papers

Physical and Chemical Properties

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Molecular Formula C8H7N
Molecular Weight 117.15 g/mol
Exact Mass 117.057849228 g/mol
Topological Polar Surface Area (TPSA) 15.80 Ų
XlogP 2.10
Atomic LogP (AlogP) 2.17
H-Bond Acceptor 0
H-Bond Donor 1
Rotatable Bonds 0

Synonyms

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1H-Indole
120-72-9
2,3-Benzopyrrole
Indol
1-Benzazole
Ketole
1-Azaindene
Benzopyrrole
2,3-Benzopyrole
Indole (natural)
There are more than 10 synonyms. If you wish to see them all click here.

2D Structure

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2D Structure of Indole

3D Structure

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ADMET Properties (via admetSAR 2)

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Target Value Probability (raw) Probability (%)
Human Intestinal Absorption + 1.0000 100.00%
Caco-2 + 0.9271 92.71%
Blood Brain Barrier + 0.9750 97.50%
Human oral bioavailability + 0.6857 68.57%
Subcellular localzation Lysosomes 0.7437 74.37%
OATP2B1 inhibitior - 1.0000 100.00%
OATP1B1 inhibitior + 0.9723 97.23%
OATP1B3 inhibitior + 0.9621 96.21%
MATE1 inhibitior - 0.9000 90.00%
OCT2 inhibitior - 0.9500 95.00%
BSEP inhibitior - 0.8964 89.64%
P-glycoprotein inhibitior - 0.9895 98.95%
P-glycoprotein substrate - 0.9776 97.76%
CYP3A4 substrate - 0.7748 77.48%
CYP2C9 substrate - 1.0000 100.00%
CYP2D6 substrate - 0.6642 66.42%
CYP3A4 inhibition - 0.9449 94.49%
CYP2C9 inhibition - 0.5491 54.91%
CYP2C19 inhibition + 0.7661 76.61%
CYP2D6 inhibition + 0.6189 61.89%
CYP1A2 inhibition + 0.7870 78.70%
CYP2C8 inhibition - 0.9063 90.63%
CYP inhibitory promiscuity - 0.6191 61.91%
UGT catelyzed - 0.0000 0.00%
Carcinogenicity (binary) - 0.7700 77.00%
Carcinogenicity (trinary) Non-required 0.5548 55.48%
Eye corrosion - 0.7446 74.46%
Eye irritation + 1.0000 100.00%
Skin irritation + 0.8429 84.29%
Skin corrosion - 0.8770 87.70%
Ames mutagenesis - 0.7900 79.00%
Human Ether-a-go-go-Related Gene inhibition - 0.7308 73.08%
Micronuclear + 0.8259 82.59%
Hepatotoxicity + 0.6625 66.25%
skin sensitisation - 0.6776 67.76%
Respiratory toxicity - 0.5444 54.44%
Reproductive toxicity + 0.6000 60.00%
Mitochondrial toxicity - 0.9125 91.25%
Nephrotoxicity - 0.5543 55.43%
Acute Oral Toxicity (c) III 0.7792 77.92%
Estrogen receptor binding - 0.8363 83.63%
Androgen receptor binding - 0.8670 86.70%
Thyroid receptor binding - 0.8320 83.20%
Glucocorticoid receptor binding - 0.8554 85.54%
Aromatase binding - 0.7900 79.00%
PPAR gamma - 0.8326 83.26%
Honey bee toxicity - 0.9439 94.39%
Biodegradation + 0.7250 72.50%
Crustacea aquatic toxicity + 0.8300 83.00%
Fish aquatic toxicity - 0.4260 42.60%

Targets

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Proven Targets:

CHEMBL ID UniProt ID Name Min activity Assay type Source
CHEMBL261 P00915 Carbonic anhydrase I 27400 nM
Ki
PMID: 22245047
CHEMBL205 P00918 Carbonic anhydrase II 32500 nM
Ki
PMID: 22245047
CHEMBL3729 P22748 Carbonic anhydrase IV 2330 nM
Ki
PMID: 22245047
CHEMBL3025 P23280 Carbonic anhydrase VI 3630 nM
Ki
PMID: 22245047

Predicted Targets (via Super-PRED):

CHEMBL ID UniProt ID Name Probability Model accuracy
CHEMBL5619 P27695 DNA-(apurinic or apyrimidinic site) lyase 93.86% 91.11%
CHEMBL2996 Q05655 Protein kinase C delta 92.81% 97.79%
CHEMBL3310 Q96DB2 Histone deacetylase 11 85.77% 88.56%
CHEMBL3108638 O15164 Transcription intermediary factor 1-alpha 85.59% 95.56%
CHEMBL3192 Q9BY41 Histone deacetylase 8 84.29% 93.99%
CHEMBL2035 P08912 Muscarinic acetylcholine receptor M5 84.17% 94.62%
CHEMBL2708 Q16584 Mitogen-activated protein kinase kinase kinase 11 83.16% 81.14%

Cross-Links

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PubChem 798
NPASS NPC82295
ChEMBL CHEMBL15844
LOTUS LTS0185357
wikiData Q319541