D-malate

Details

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Internal ID f30964bb-5a90-4613-9238-f4f692a38582
Taxonomy Organic acids and derivatives > Hydroxy acids and derivatives > Beta hydroxy acids and derivatives
IUPAC Name (2R)-2-hydroxybutanedioic acid
SMILES (Canonical) C(C(C(=O)O)O)C(=O)O
SMILES (Isomeric) C([C@H](C(=O)O)O)C(=O)O
InChI InChI=1S/C4H6O5/c5-2(4(8)9)1-3(6)7/h2,5H,1H2,(H,6,7)(H,8,9)/t2-/m1/s1
InChI Key BJEPYKJPYRNKOW-UWTATZPHSA-N
Popularity 500 references in papers

Physical and Chemical Properties

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Molecular Formula C4H6O5
Molecular Weight 134.09 g/mol
Exact Mass 134.02152329 g/mol
Topological Polar Surface Area (TPSA) 94.80 Ų
XlogP -1.30
Atomic LogP (AlogP) -1.09
H-Bond Acceptor 3
H-Bond Donor 3
Rotatable Bonds 3

Synonyms

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636-61-3
D-malic acid
D(+)-Malic acid
(R)-2-Hydroxysuccinic acid
(R)-malic acid
D-malate
(2R)-2-hydroxybutanedioic acid
Malic acid, D-
Malic acid D-(+)-form
L(+)-Malic acid
There are more than 10 synonyms. If you wish to see them all click here.

2D Structure

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2D Structure of D-malate

3D Structure

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ADMET Properties (via admetSAR 2)

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Target Value Probability (raw) Probability (%)
Human Intestinal Absorption - 0.5822 58.22%
Caco-2 - 0.9584 95.84%
Blood Brain Barrier - 0.5750 57.50%
Human oral bioavailability + 0.6143 61.43%
Subcellular localzation Mitochondria 0.6921 69.21%
OATP2B1 inhibitior - 0.8555 85.55%
OATP1B1 inhibitior + 0.9522 95.22%
OATP1B3 inhibitior + 0.9499 94.99%
MATE1 inhibitior - 1.0000 100.00%
OCT2 inhibitior - 1.0000 100.00%
BSEP inhibitior - 0.9789 97.89%
P-glycoprotein inhibitior - 0.9837 98.37%
P-glycoprotein substrate - 0.9914 99.14%
CYP3A4 substrate - 0.7875 78.75%
CYP2C9 substrate + 0.5992 59.92%
CYP2D6 substrate - 0.8355 83.55%
CYP3A4 inhibition - 0.9066 90.66%
CYP2C9 inhibition - 0.9691 96.91%
CYP2C19 inhibition - 0.9716 97.16%
CYP2D6 inhibition - 0.9587 95.87%
CYP1A2 inhibition - 0.9521 95.21%
CYP2C8 inhibition - 0.9956 99.56%
CYP inhibitory promiscuity - 0.9934 99.34%
UGT catelyzed + 0.9000 90.00%
Carcinogenicity (binary) - 0.7830 78.30%
Carcinogenicity (trinary) Non-required 0.7593 75.93%
Eye corrosion - 0.7563 75.63%
Eye irritation + 0.9629 96.29%
Skin irritation + 0.6209 62.09%
Skin corrosion - 0.8853 88.53%
Ames mutagenesis - 0.7500 75.00%
Human Ether-a-go-go-Related Gene inhibition - 0.8293 82.93%
Micronuclear - 0.5700 57.00%
Hepatotoxicity + 0.6000 60.00%
skin sensitisation - 0.9393 93.93%
Respiratory toxicity - 0.8667 86.67%
Reproductive toxicity - 0.8333 83.33%
Mitochondrial toxicity - 0.9000 90.00%
Nephrotoxicity - 0.5751 57.51%
Acute Oral Toxicity (c) III 0.8028 80.28%
Estrogen receptor binding - 0.9037 90.37%
Androgen receptor binding - 0.8133 81.33%
Thyroid receptor binding - 0.8670 86.70%
Glucocorticoid receptor binding - 0.7970 79.70%
Aromatase binding - 0.8803 88.03%
PPAR gamma - 0.7575 75.75%
Honey bee toxicity - 0.9330 93.30%
Biodegradation + 0.9500 95.00%
Crustacea aquatic toxicity - 0.9100 91.00%
Fish aquatic toxicity - 0.7957 79.57%

Targets

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Proven Targets:

CHEMBL ID UniProt ID Name Min activity Assay type Source
CHEMBL1293232 Q16637 Survival motor neuron protein 1258.9 nM
Potency
via CMAUP

Predicted Targets (via Super-PRED):

CHEMBL ID UniProt ID Name Probability Model accuracy
CHEMBL3251 P19838 Nuclear factor NF-kappa-B p105 subunit 88.84% 96.09%
CHEMBL2581 P07339 Cathepsin D 88.23% 98.95%
CHEMBL4793 Q86TI2 Dipeptidyl peptidase IX 83.45% 96.95%
CHEMBL221 P23219 Cyclooxygenase-1 83.44% 90.17%
CHEMBL3060 Q9Y345 Glycine transporter 2 82.00% 99.17%
CHEMBL4261 Q16665 Hypoxia-inducible factor 1 alpha 81.27% 85.14%
CHEMBL1907591 P30926 Neuronal acetylcholine receptor; alpha4/beta4 81.00% 100.00%
CHEMBL4657 Q6V1X1 Dipeptidyl peptidase VIII 80.12% 97.21%

Cross-Links

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PubChem 92824
NPASS NPC19044
ChEMBL CHEMBL225986
LOTUS LTS0237082
wikiData Q27104149