Prodelphinidin B3

Details

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Internal ID 5d41441b-99bc-4cee-8b6f-a93056bf259c
Taxonomy Phenylpropanoids and polyketides > Flavonoids > Biflavonoids and polyflavonoids
IUPAC Name (2R,3S)-2-(3,4,5-trihydroxyphenyl)-8-[(2R,3S,4S)-3,5,7-trihydroxy-2-(3,4,5-trihydroxyphenyl)-3,4-dihydro-2H-chromen-4-yl]-3,4-dihydro-2H-chromene-3,5,7-triol
SMILES (Canonical) C1C(C(OC2=C1C(=CC(=C2C3C(C(OC4=CC(=CC(=C34)O)O)C5=CC(=C(C(=C5)O)O)O)O)O)O)C6=CC(=C(C(=C6)O)O)O)O
SMILES (Isomeric) C1[C@@H]([C@H](OC2=C1C(=CC(=C2[C@H]3[C@@H]([C@H](OC4=CC(=CC(=C34)O)O)C5=CC(=C(C(=C5)O)O)O)O)O)O)C6=CC(=C(C(=C6)O)O)O)O
InChI InChI=1S/C30H26O14/c31-11-5-14(33)22-21(6-11)43-29(10-3-18(37)26(41)19(38)4-10)27(42)24(22)23-15(34)8-13(32)12-7-20(39)28(44-30(12)23)9-1-16(35)25(40)17(36)2-9/h1-6,8,20,24,27-29,31-42H,7H2/t20-,24-,27-,28+,29+/m0/s1
InChI Key RTEDIEITOBJPNI-MDPSILPBSA-N
Popularity 2 references in papers

Physical and Chemical Properties

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Molecular Formula C30H26O14
Molecular Weight 610.50 g/mol
Exact Mass 610.13225550 g/mol
Topological Polar Surface Area (TPSA) 261.00 Ų
XlogP 1.70
Atomic LogP (AlogP) 2.41
H-Bond Acceptor 14
H-Bond Donor 12
Rotatable Bonds 3

Synonyms

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78362-05-7
(+)-Prodelphinidin B3
YKF63X6RDD
(2R,3S)-2-(3,4,5-Trihydroxyphenyl)-8-[(2R,3S,4S)-3,5,7-trihydroxy-2-(3,4,5-trihydroxyphenyl)-3,4-dihydro-2H-chromen-4-yl]-3,4-dihydro-2H-chromene-3,5,7-triol
(4,8'-Bi-2H-1-benzopyran)-3,3',5,5',7,7'-hexol, 3,3',4,4'-tetrahydro-2,2'-bis(3,4,5-trihydroxyphenyl)-, (2R,2'R,3S,3'S,4S)-
ProdelphinidinB3
UNII-YKF63X6RDD
CHEMBL2414346
DTXSID001030248
Gallocatechin-(4alpha->8)-gallocatechin
There are more than 10 synonyms. If you wish to see them all click here.

2D Structure

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2D Structure of Prodelphinidin B3

3D Structure

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ADMET Properties (via admetSAR 2)

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Target Value Probability (raw) Probability (%)
Human Intestinal Absorption + 0.8698 86.98%
Caco-2 - 0.9105 91.05%
Blood Brain Barrier - 0.7000 70.00%
Human oral bioavailability - 0.6857 68.57%
Subcellular localzation Mitochondria 0.4793 47.93%
OATP2B1 inhibitior - 0.5617 56.17%
OATP1B1 inhibitior + 0.9385 93.85%
OATP1B3 inhibitior + 0.9459 94.59%
MATE1 inhibitior - 0.9600 96.00%
OCT2 inhibitior - 0.8750 87.50%
BSEP inhibitior + 0.8809 88.09%
P-glycoprotein inhibitior + 0.6518 65.18%
P-glycoprotein substrate - 0.7613 76.13%
CYP3A4 substrate + 0.5655 56.55%
CYP2C9 substrate - 0.5994 59.94%
CYP2D6 substrate + 0.5264 52.64%
CYP3A4 inhibition - 0.8309 83.09%
CYP2C9 inhibition - 0.9071 90.71%
CYP2C19 inhibition - 0.9026 90.26%
CYP2D6 inhibition - 0.9231 92.31%
CYP1A2 inhibition - 0.9155 91.55%
CYP2C8 inhibition + 0.6585 65.85%
CYP inhibitory promiscuity - 0.8625 86.25%
UGT catelyzed + 0.7000 70.00%
Carcinogenicity (binary) - 0.9800 98.00%
Carcinogenicity (trinary) Non-required 0.6139 61.39%
Eye corrosion - 0.9904 99.04%
Eye irritation - 0.8307 83.07%
Skin irritation - 0.6044 60.44%
Skin corrosion - 0.9317 93.17%
Ames mutagenesis + 0.5600 56.00%
Human Ether-a-go-go-Related Gene inhibition + 0.8828 88.28%
Micronuclear + 0.7859 78.59%
Hepatotoxicity - 0.5250 52.50%
skin sensitisation - 0.7665 76.65%
Respiratory toxicity + 0.6778 67.78%
Reproductive toxicity + 0.8000 80.00%
Mitochondrial toxicity + 0.6000 60.00%
Nephrotoxicity - 0.7081 70.81%
Acute Oral Toxicity (c) IV 0.5696 56.96%
Estrogen receptor binding + 0.7506 75.06%
Androgen receptor binding + 0.7704 77.04%
Thyroid receptor binding + 0.6492 64.92%
Glucocorticoid receptor binding + 0.5812 58.12%
Aromatase binding - 0.5398 53.98%
PPAR gamma + 0.7508 75.08%
Honey bee toxicity - 0.8281 82.81%
Biodegradation - 0.8000 80.00%
Crustacea aquatic toxicity + 0.5500 55.00%
Fish aquatic toxicity + 0.6855 68.55%

Targets

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Proven Targets:

CHEMBL ID UniProt ID Name Min activity Assay type Source
No proven targets yet!

Predicted Targets (via Super-PRED):

CHEMBL ID UniProt ID Name Probability Model accuracy
CHEMBL5619 P27695 DNA-(apurinic or apyrimidinic site) lyase 99.66% 91.11%
CHEMBL4040 P28482 MAP kinase ERK2 97.10% 83.82%
CHEMBL3251 P19838 Nuclear factor NF-kappa-B p105 subunit 93.44% 96.09%
CHEMBL1929 P47989 Xanthine dehydrogenase 93.14% 96.12%
CHEMBL3137262 O60341 LSD1/CoREST complex 90.11% 97.09%
CHEMBL1806 P11388 DNA topoisomerase II alpha 89.89% 89.00%
CHEMBL3401 O75469 Pregnane X receptor 85.16% 94.73%
CHEMBL3194 P02766 Transthyretin 85.15% 90.71%
CHEMBL236 P41143 Delta opioid receptor 85.00% 99.35%
CHEMBL1860 P10827 Thyroid hormone receptor alpha 84.85% 99.15%
CHEMBL233 P35372 Mu opioid receptor 83.76% 97.93%
CHEMBL3108638 O15164 Transcription intermediary factor 1-alpha 83.33% 95.56%
CHEMBL3004 P33527 Multidrug resistance-associated protein 1 83.20% 96.37%
CHEMBL4208 P20618 Proteasome component C5 81.50% 90.00%
CHEMBL2535 P11166 Glucose transporter 80.68% 98.75%

Cross-Links

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PubChem 13831068
NPASS NPC160789