Palmidin A

Details

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Internal ID 42c5064f-9d19-488f-8efc-2ac5b9cc942c
Taxonomy Benzenoids > Anthracenes
IUPAC Name 10-[4,5-dihydroxy-2-(hydroxymethyl)-10-oxo-9H-anthracen-9-yl]-1,3,8-trihydroxy-6-methyl-10H-anthracen-9-one
SMILES (Canonical) CC1=CC2=C(C(=C1)O)C(=O)C3=C(C2C4C5=C(C(=CC=C5)O)C(=O)C6=C4C=C(C=C6O)CO)C=C(C=C3O)O
SMILES (Isomeric) CC1=CC2=C(C(=C1)O)C(=O)C3=C(C2C4C5=C(C(=CC=C5)O)C(=O)C6=C4C=C(C=C6O)CO)C=C(C=C3O)O
InChI InChI=1S/C30H22O8/c1-12-5-16-24(18-9-14(32)10-22(36)28(18)30(38)26(16)20(34)6-12)23-15-3-2-4-19(33)25(15)29(37)27-17(23)7-13(11-31)8-21(27)35/h2-10,23-24,31-36H,11H2,1H3
InChI Key DJTVMANCSQLMCX-UHFFFAOYSA-N
Popularity 0 references in papers

Physical and Chemical Properties

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Molecular Formula C30H22O8
Molecular Weight 510.50 g/mol
Exact Mass 510.13146766 g/mol
Topological Polar Surface Area (TPSA) 156.00 Ų
XlogP 4.90
Atomic LogP (AlogP) 4.07
H-Bond Acceptor 8
H-Bond Donor 6
Rotatable Bonds 2

Synonyms

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UNII-RF802M0XYX
RF802M0XYX
17062-55-4
(9,9'-Bianthracene)-10,10'(9H,9'H)-dione, 2,4,4',5,5'-pentahydroxy-2'-(hydroxymethyl)-7-methyl-
Aloeemodin-emodin bianthrone
CHEBI:177506
DTXSID101318495
10-[4,5-dihydroxy-2-(hydroxymethyl)-10-oxo-9H-anthracen-9-yl]-1,3,8-trihydroxy-6-methyl-10H-anthracen-9-one
Q27288091

2D Structure

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2D Structure of Palmidin A

3D Structure

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ADMET Properties (via admetSAR 2)

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Target Value Probability (raw) Probability (%)
Human Intestinal Absorption + 0.9695 96.95%
Caco-2 - 0.6977 69.77%
Blood Brain Barrier - 0.8250 82.50%
Human oral bioavailability - 0.5571 55.71%
Subcellular localzation Mitochondria 0.8323 83.23%
OATP2B1 inhibitior + 0.5677 56.77%
OATP1B1 inhibitior + 0.7699 76.99%
OATP1B3 inhibitior + 0.9190 91.90%
MATE1 inhibitior - 0.7200 72.00%
OCT2 inhibitior - 0.9250 92.50%
BSEP inhibitior + 0.7735 77.35%
P-glycoprotein inhibitior - 0.5867 58.67%
P-glycoprotein substrate - 0.8177 81.77%
CYP3A4 substrate + 0.5791 57.91%
CYP2C9 substrate - 0.8000 80.00%
CYP2D6 substrate - 0.8341 83.41%
CYP3A4 inhibition - 0.5122 51.22%
CYP2C9 inhibition + 0.7273 72.73%
CYP2C19 inhibition - 0.5209 52.09%
CYP2D6 inhibition - 0.7856 78.56%
CYP1A2 inhibition + 0.7561 75.61%
CYP2C8 inhibition + 0.5461 54.61%
CYP inhibitory promiscuity + 0.6276 62.76%
UGT catelyzed + 0.7000 70.00%
Carcinogenicity (binary) - 0.8375 83.75%
Carcinogenicity (trinary) Non-required 0.7057 70.57%
Eye corrosion - 0.9934 99.34%
Eye irritation - 0.6887 68.87%
Skin irritation - 0.6792 67.92%
Skin corrosion - 0.9341 93.41%
Ames mutagenesis + 0.7200 72.00%
Human Ether-a-go-go-Related Gene inhibition + 0.7864 78.64%
Micronuclear + 0.6159 61.59%
Hepatotoxicity + 0.6500 65.00%
skin sensitisation - 0.8856 88.56%
Respiratory toxicity - 0.5444 54.44%
Reproductive toxicity - 0.5556 55.56%
Mitochondrial toxicity + 0.6625 66.25%
Nephrotoxicity + 0.5839 58.39%
Acute Oral Toxicity (c) III 0.4758 47.58%
Estrogen receptor binding + 0.8185 81.85%
Androgen receptor binding + 0.7467 74.67%
Thyroid receptor binding - 0.6455 64.55%
Glucocorticoid receptor binding + 0.8261 82.61%
Aromatase binding - 0.5870 58.70%
PPAR gamma + 0.8037 80.37%
Honey bee toxicity - 0.8931 89.31%
Biodegradation - 0.9000 90.00%
Crustacea aquatic toxicity - 0.6000 60.00%
Fish aquatic toxicity + 0.9601 96.01%

Targets

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Proven Targets:

CHEMBL ID UniProt ID Name Min activity Assay type Source
No proven targets yet!

Predicted Targets (via Super-PRED):

CHEMBL ID UniProt ID Name Probability Model accuracy
CHEMBL2581 P07339 Cathepsin D 98.68% 98.95%
CHEMBL3108638 O15164 Transcription intermediary factor 1-alpha 96.16% 95.56%
CHEMBL5619 P27695 DNA-(apurinic or apyrimidinic site) lyase 93.73% 91.11%
CHEMBL3401 O75469 Pregnane X receptor 91.01% 94.73%
CHEMBL3251 P19838 Nuclear factor NF-kappa-B p105 subunit 89.93% 96.09%
CHEMBL1806 P11388 DNA topoisomerase II alpha 88.63% 89.00%
CHEMBL1860 P10827 Thyroid hormone receptor alpha 87.05% 99.15%
CHEMBL4793 Q86TI2 Dipeptidyl peptidase IX 85.58% 96.95%
CHEMBL1929 P47989 Xanthine dehydrogenase 85.55% 96.12%
CHEMBL3192 Q9BY41 Histone deacetylase 8 84.89% 93.99%
CHEMBL3038477 P67870 Casein kinase II alpha/beta 81.99% 99.23%
CHEMBL4203 Q9HAZ1 Dual specificity protein kinase CLK4 81.46% 94.45%
CHEMBL1293249 Q13887 Kruppel-like factor 5 81.00% 86.33%

Plants that contains it

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Cross-Links

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PubChem 5320384
NPASS NPC91382