D-Tetrahydropalmatine

Details

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Internal ID 2fea6c1d-6d71-44a5-b53d-be2ecdfdd19c
Taxonomy Alkaloids and derivatives > Protoberberine alkaloids and derivatives
IUPAC Name (13aR)-2,3,9,10-tetramethoxy-6,8,13,13a-tetrahydro-5H-isoquinolino[2,1-b]isoquinoline
SMILES (Canonical) COC1=C(C2=C(CC3C4=CC(=C(C=C4CCN3C2)OC)OC)C=C1)OC
SMILES (Isomeric) COC1=C(C2=C(C[C@@H]3C4=CC(=C(C=C4CCN3C2)OC)OC)C=C1)OC
InChI InChI=1S/C21H25NO4/c1-23-18-6-5-13-9-17-15-11-20(25-3)19(24-2)10-14(15)7-8-22(17)12-16(13)21(18)26-4/h5-6,10-11,17H,7-9,12H2,1-4H3/t17-/m1/s1
InChI Key AEQDJSLRWYMAQI-QGZVFWFLSA-N
Popularity 317 references in papers

Physical and Chemical Properties

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Molecular Formula C21H25NO4
Molecular Weight 355.40 g/mol
Exact Mass 355.17835828 g/mol
Topological Polar Surface Area (TPSA) 40.20 Ų
XlogP 3.20
Atomic LogP (AlogP) 3.38
H-Bond Acceptor 5
H-Bond Donor 0
Rotatable Bonds 4

Synonyms

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3520-14-7
(+)-Tetrahydropalmatine
(+)-(R)-Tetrahydropalmatine
(+)-Corydalis B
Tetrahydropalmatine, (+)-
Corydalis alkaloid B
tetrahydropalmatine
Tetrahydropalmatin
(+)-2,3,9,10-Tetramethoxyberbine
corydalis B
There are more than 10 synonyms. If you wish to see them all click here.

2D Structure

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2D Structure of D-Tetrahydropalmatine

3D Structure

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ADMET Properties (via admetSAR 2)

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Target Value Probability (raw) Probability (%)
Human Intestinal Absorption + 0.9392 93.92%
Caco-2 + 0.9145 91.45%
Blood Brain Barrier + 0.6750 67.50%
Human oral bioavailability - 0.8143 81.43%
Subcellular localzation Mitochondria 0.6881 68.81%
OATP2B1 inhibitior - 1.0000 100.00%
OATP1B1 inhibitior + 0.9485 94.85%
OATP1B3 inhibitior + 0.9480 94.80%
MATE1 inhibitior - 0.9600 96.00%
OCT2 inhibitior + 0.6250 62.50%
BSEP inhibitior + 0.6039 60.39%
P-glycoprotein inhibitior + 0.6925 69.25%
P-glycoprotein substrate + 0.5476 54.76%
CYP3A4 substrate + 0.5952 59.52%
CYP2C9 substrate + 0.7753 77.53%
CYP2D6 substrate + 0.8760 87.60%
CYP3A4 inhibition - 0.7126 71.26%
CYP2C9 inhibition - 0.9313 93.13%
CYP2C19 inhibition - 0.6613 66.13%
CYP2D6 inhibition + 0.7363 73.63%
CYP1A2 inhibition - 0.6375 63.75%
CYP2C8 inhibition - 0.6710 67.10%
CYP inhibitory promiscuity - 0.7873 78.73%
UGT catelyzed - 0.0000 0.00%
Carcinogenicity (binary) - 0.9800 98.00%
Carcinogenicity (trinary) Non-required 0.6277 62.77%
Eye corrosion - 0.9896 98.96%
Eye irritation - 0.9719 97.19%
Skin irritation - 0.7735 77.35%
Skin corrosion - 0.9468 94.68%
Ames mutagenesis - 0.6000 60.00%
Human Ether-a-go-go-Related Gene inhibition + 0.9074 90.74%
Micronuclear - 0.5700 57.00%
Hepatotoxicity - 0.7000 70.00%
skin sensitisation - 0.9013 90.13%
Respiratory toxicity + 0.8556 85.56%
Reproductive toxicity + 0.8000 80.00%
Mitochondrial toxicity + 0.8250 82.50%
Nephrotoxicity - 0.6563 65.63%
Acute Oral Toxicity (c) III 0.4578 45.78%
Estrogen receptor binding + 0.6884 68.84%
Androgen receptor binding - 0.4813 48.13%
Thyroid receptor binding + 0.6218 62.18%
Glucocorticoid receptor binding + 0.5908 59.08%
Aromatase binding - 0.8005 80.05%
PPAR gamma - 0.6837 68.37%
Honey bee toxicity - 0.8753 87.53%
Biodegradation - 0.9250 92.50%
Crustacea aquatic toxicity + 0.7300 73.00%
Fish aquatic toxicity - 0.3746 37.46%

Targets

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Proven Targets:

CHEMBL ID UniProt ID Name Min activity Assay type Source
CHEMBL4081 P13726 Coagulation factor III 22.78 nM
14.98 nM
IC50
IC50
via Super-PRED
via Super-PRED
CHEMBL2056 P21728 Dopamine D1 receptor 153 nM
Ki
via Super-PRED
CHEMBL217 P14416 Dopamine D2 receptor 450 nM
IC50
via Super-PRED
CHEMBL1850 P21918 Dopamine D5 receptor 305 nM
Ki
via Super-PRED

Predicted Targets (via Super-PRED):

CHEMBL ID UniProt ID Name Probability Model accuracy
CHEMBL3251 P19838 Nuclear factor NF-kappa-B p105 subunit 98.20% 96.09%
CHEMBL5697 Q9GZT9 Egl nine homolog 1 96.08% 93.40%
CHEMBL5747 Q92793 CREB-binding protein 94.59% 95.12%
CHEMBL1293249 Q13887 Kruppel-like factor 5 91.95% 86.33%
CHEMBL2535 P11166 Glucose transporter 91.17% 98.75%
CHEMBL4302 P08183 P-glycoprotein 1 90.11% 92.98%
CHEMBL241 Q14432 Phosphodiesterase 3A 89.22% 92.94%
CHEMBL225 P28335 Serotonin 2c (5-HT2c) receptor 88.63% 89.62%
CHEMBL5608 Q16288 NT-3 growth factor receptor 87.41% 95.89%
CHEMBL3192 Q9BY41 Histone deacetylase 8 86.68% 93.99%
CHEMBL4203 Q9HAZ1 Dual specificity protein kinase CLK4 86.65% 94.45%
CHEMBL1907603 Q05586 Glutamate NMDA receptor; GRIN1/GRIN2B 86.23% 95.89%
CHEMBL3108638 O15164 Transcription intermediary factor 1-alpha 86.07% 95.56%
CHEMBL2069156 Q14145 Kelch-like ECH-associated protein 1 85.33% 82.38%
CHEMBL2146302 O94925 Glutaminase kidney isoform, mitochondrial 83.90% 100.00%
CHEMBL2581 P07339 Cathepsin D 83.69% 98.95%
CHEMBL3438 Q05513 Protein kinase C zeta 83.36% 88.48%
CHEMBL4247 Q9UM73 ALK tyrosine kinase receptor 81.44% 96.86%
CHEMBL4681 P42330 Aldo-keto-reductase family 1 member C3 80.53% 89.05%

Cross-Links

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PubChem 969488
NPASS NPC106295
LOTUS LTS0175021
wikiData Q27268022