Spermidine

Details

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Internal ID f7688dfa-9a38-4283-a2d1-25d74ba0b88e
Taxonomy Organic nitrogen compounds > Organonitrogen compounds > Amines > Secondary amines > Dialkylamines
IUPAC Name N'-(3-aminopropyl)butane-1,4-diamine
SMILES (Canonical) C(CCNCCCN)CN
SMILES (Isomeric) C(CCNCCCN)CN
InChI InChI=1S/C7H19N3/c8-4-1-2-6-10-7-3-5-9/h10H,1-9H2
InChI Key ATHGHQPFGPMSJY-UHFFFAOYSA-N
Popularity 17,635 references in papers

Physical and Chemical Properties

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Molecular Formula C7H19N3
Molecular Weight 145.25 g/mol
Exact Mass 145.157897619 g/mol
Topological Polar Surface Area (TPSA) 64.10 Ų
XlogP -1.00

Synonyms

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124-20-9
1,5,10-Triazadecane
4-Azaoctamethylenediamine
N1-(3-Aminopropyl)butane-1,4-diamine
Spermidin
4-Azaoctane-1,8-diamine
N-(3-aminopropyl)butane-1,4-diamine
1,4-Butanediamine, N-(3-aminopropyl)-
N-(3-Aminopropyl)-1,4-butanediamine
1,8-Diamino-4-azaoctane
There are more than 10 synonyms. If you wish to see them all click here.

2D Structure

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2D Structure of Spermidine

3D Structure

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ADMET Properties (via admetSAR 2)

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Target Value Probability (raw) Probability (%)
No predicted properties yet!

Targets

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Proven Targets:

CHEMBL ID UniProt ID Name Min activity Assay type Source
CHEMBL2903 P16050 Arachidonate 15-lipoxygenase 12589.3 nM
Potency
via CMAUP
CHEMBL261 P00915 Carbonic anhydrase I 1400 nM
Ki
PMID: 20590092
CHEMBL205 P00918 Carbonic anhydrase II 1110 nM
Ki
PMID: 20590092
CHEMBL2885 P07451 Carbonic anhydrase III 11500 nM
Ki
PMID: 20590092
CHEMBL3729 P22748 Carbonic anhydrase IV 112 nM
112 nM
Ki
Ki
PMID: 20590092
via Super-PRED
CHEMBL3594 Q16790 Carbonic anhydrase IX 1370 nM
Ki
PMID: 20590092
CHEMBL4789 P35218 Carbonic anhydrase VA 1220 nM
Ki
PMID: 20590092
CHEMBL3969 Q9Y2D0 Carbonic anhydrase VB 1440 nM
Ki
PMID: 20590092
CHEMBL3025 P23280 Carbonic anhydrase VI 1410 nM
Ki
PMID: 20590092
CHEMBL2326 P43166 Carbonic anhydrase VII 1230 nM
Ki
PMID: 20590092
CHEMBL3242 O43570 Carbonic anhydrase XII 44100 nM
Ki
PMID: 20590092
CHEMBL3510 Q9ULX7 Carbonic anhydrase XIV 1000 nM
Ki
PMID: 20590092
CHEMBL3356 P05177 Cytochrome P450 1A2 31622.78 nM
AC50
via CMAUP
CHEMBL3397 P11712 Cytochrome P450 2C9 12589.25 nM
AC50
via CMAUP
CHEMBL2842 P42345 Serine/threonine-protein kinase mTOR 23280.9 nM
26121.6 nM
Potency
Potency
via CMAUP
via CMAUP
CHEMBL1293256 P40225 Thrombopoietin 6309.6 nM
6309.6 nM
Potency
Potency
via CMAUP
via CMAUP
CHEMBL1963 P16473 Thyroid stimulating hormone receptor 31622.8 nM
Potency
via CMAUP

Predicted Targets (via Super-PRED):

CHEMBL ID UniProt ID Name Probability Model accuracy
CHEMBL3492 P49721 Proteasome Macropain subunit 90.65% 90.24%
CHEMBL3251 P19838 Nuclear factor NF-kappa-B p105 subunit 89.05% 96.09%
CHEMBL5619 P27695 DNA-(apurinic or apyrimidinic site) lyase 87.90% 91.11%
CHEMBL1907594 P30926 Neuronal acetylcholine receptor; alpha3/beta4 87.28% 97.23%
CHEMBL3038469 P24941 CDK2/Cyclin A 84.97% 91.38%
CHEMBL2916 O14746 Telomerase reverse transcriptase 84.29% 90.00%
CHEMBL3230 O95977 Sphingosine 1-phosphate receptor Edg-6 83.82% 94.01%
CHEMBL4581 P52732 Kinesin-like protein 1 83.29% 93.18%
CHEMBL3060 Q9Y345 Glycine transporter 2 80.13% 99.17%
CHEMBL3892 Q99500 Sphingosine 1-phosphate receptor Edg-3 80.13% 97.29%

Cross-Links

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PubChem 1102
NPASS NPC193536
ChEMBL CHEMBL19612
LOTUS LTS0061428
wikiData Q418834