Rotenone

Details

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Internal ID f39a51b6-83a8-4659-a4eb-dfea7711f4f8
Taxonomy Phenylpropanoids and polyketides > Isoflavonoids > Rotenoids > Rotenones
IUPAC Name (1S,6R,13S)-16,17-dimethoxy-6-prop-1-en-2-yl-2,7,20-trioxapentacyclo[11.8.0.03,11.04,8.014,19]henicosa-3(11),4(8),9,14,16,18-hexaen-12-one
SMILES (Canonical) CC(=C)C1CC2=C(O1)C=CC3=C2OC4COC5=CC(=C(C=C5C4C3=O)OC)OC
SMILES (Isomeric) CC(=C)[C@H]1CC2=C(O1)C=CC3=C2O[C@@H]4COC5=CC(=C(C=C5[C@@H]4C3=O)OC)OC
InChI InChI=1S/C23H22O6/c1-11(2)16-8-14-15(28-16)6-5-12-22(24)21-13-7-18(25-3)19(26-4)9-17(13)27-10-20(21)29-23(12)14/h5-7,9,16,20-21H,1,8,10H2,2-4H3/t16-,20-,21+/m1/s1
InChI Key JUVIOZPCNVVQFO-HBGVWJBISA-N
Popularity 12,292 references in papers

Physical and Chemical Properties

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Molecular Formula C23H22O6
Molecular Weight 394.40 g/mol
Exact Mass 394.14163842 g/mol
Topological Polar Surface Area (TPSA) 63.20 Ų
XlogP 4.10
Atomic LogP (AlogP) 3.70
H-Bond Acceptor 6
H-Bond Donor 0
Rotatable Bonds 3

Synonyms

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83-79-4
Dactinol
Paraderil
Barbasco
Tubatoxin
(-)-Rotenone
(-)-cis-Rotenone
Rotocide
Derrin
Derris
There are more than 10 synonyms. If you wish to see them all click here.

2D Structure

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2D Structure of Rotenone

3D Structure

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ADMET Properties (via admetSAR 2)

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Target Value Probability (raw) Probability (%)
Human Intestinal Absorption + 0.9955 99.55%
Caco-2 + 0.6872 68.72%
Blood Brain Barrier + 0.5500 55.00%
Human oral bioavailability + 0.5429 54.29%
Subcellular localzation Mitochondria 0.6885 68.85%
OATP2B1 inhibitior - 1.0000 100.00%
OATP1B1 inhibitior - 0.7738 77.38%
OATP1B3 inhibitior + 0.9599 95.99%
MATE1 inhibitior - 0.9200 92.00%
OCT2 inhibitior - 0.9500 95.00%
BSEP inhibitior + 0.7962 79.62%
P-glycoprotein inhibitior + 0.8551 85.51%
P-glycoprotein substrate - 0.5225 52.25%
CYP3A4 substrate + 0.6359 63.59%
CYP2C9 substrate - 0.7859 78.59%
CYP2D6 substrate - 0.7307 73.07%
CYP3A4 inhibition + 0.7961 79.61%
CYP2C9 inhibition - 0.7686 76.86%
CYP2C19 inhibition + 0.8993 89.93%
CYP2D6 inhibition - 0.9231 92.31%
CYP1A2 inhibition + 0.9106 91.06%
CYP2C8 inhibition + 0.4644 46.44%
CYP inhibitory promiscuity + 0.8226 82.26%
UGT catelyzed - 0.0000 0.00%
Carcinogenicity (binary) - 0.9900 99.00%
Carcinogenicity (trinary) Non-required 0.7166 71.66%
Eye corrosion - 0.9843 98.43%
Eye irritation + 0.7112 71.12%
Skin irritation - 0.7739 77.39%
Skin corrosion - 0.9622 96.22%
Ames mutagenesis - 0.9200 92.00%
Human Ether-a-go-go-Related Gene inhibition - 0.5214 52.14%
Micronuclear + 0.5559 55.59%
Hepatotoxicity + 0.6000 60.00%
skin sensitisation - 0.5678 56.78%
Respiratory toxicity - 0.7778 77.78%
Reproductive toxicity + 0.9000 90.00%
Mitochondrial toxicity - 0.8000 80.00%
Nephrotoxicity + 0.6356 63.56%
Acute Oral Toxicity (c) II 0.7236 72.36%
Estrogen receptor binding + 0.8905 89.05%
Androgen receptor binding + 0.6300 63.00%
Thyroid receptor binding + 0.8461 84.61%
Glucocorticoid receptor binding + 0.8413 84.13%
Aromatase binding - 0.5765 57.65%
PPAR gamma + 0.8708 87.08%
Honey bee toxicity + 0.9768 97.68%
Biodegradation - 0.8750 87.50%
Crustacea aquatic toxicity + 0.7800 78.00%
Fish aquatic toxicity + 0.9833 98.33%

Targets

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Proven Targets:

CHEMBL ID UniProt ID Name Min activity Assay type Source
CHEMBL3577 P00352 Aldehyde dehydrogenase 1A1 35481.3 nM
Potency
via CMAUP
CHEMBL1293236 P46063 ATP-dependent DNA helicase Q1 3162.3 nM
Potency
via CMAUP
CHEMBL1293237 P54132 Bloom syndrome protein 22387.2 nM
22387.2 nM
Potency
Potency
via CMAUP
via CMAUP
CHEMBL3622 P33261 Cytochrome P450 2C19 3648.6 nM
IC50
via CMAUP
CHEMBL3397 P11712 Cytochrome P450 2C9 31622.8 nM
Potency
via CMAUP
CHEMBL340 P08684 Cytochrome P450 3A4 15848.9 nM
15848.9 nM
Potency
Potency
via CMAUP
via CMAUP
CHEMBL2392 P06746 DNA polymerase beta 39810.7 nM
Potency
via CMAUP
CHEMBL1293278 O75496 Geminin 1412.5 nM
Potency
via CMAUP
CHEMBL4261 Q16665 Hypoxia-inducible factor 1 alpha 79.4 nM
Potency
via Super-PRED
CHEMBL1293226 B2RXH2 Lysine-specific demethylase 4D-like 39810.7 nM
Potency
via CMAUP
CHEMBL4040 P28482 MAP kinase ERK2 794.3 nM
Potency
via Super-PRED
CHEMBL1293224 P10636 Microtubule-associated protein tau 8912.5 nM
Potency
via CMAUP
CHEMBL4499 P03905 NADH-ubiquinone oxidoreductase chain 4 3.5 nM
IC50
DOI: 10.1016/S0960-894X(01)81204-X
CHEMBL5162 Q6W5P4 Neuropeptide S receptor 12589.3 nM
Potency
via CMAUP
CHEMBL1293298 Q01453 Peripheral myelin protein 22 47.8 nM
47.8 nM
Potency
Potency
via CMAUP
via Super-PRED
CHEMBL1293235 P02545 Prelamin-A/C 501.2 nM
501.2 nM
891.3 nM
Potency
Potency
Potency
via Super-PRED
via CMAUP
via CMAUP
CHEMBL2842 P42345 Serine/threonine-protein kinase mTOR 46.5 nM
46.5 nM
58.5 nM
Potency
Potency
Potency
via Super-PRED
via CMAUP
via CMAUP
CHEMBL3371 P50406 Serotonin 6 (5-HT6) receptor 870 nM
IC50
via CMAUP
CHEMBL1293232 Q16637 Survival motor neuron protein 63.1 nM
63.1 nM
Potency
Potency
via Super-PRED
via CMAUP
CHEMBL1293256 P40225 Thrombopoietin 31.6 nM
Potency
via Super-PRED
CHEMBL1963 P16473 Thyroid stimulating hormone receptor 1258.9 nM
1258.9 nM
794.3 nM
Potency
Potency
Potency
via CMAUP
via CMAUP
via Super-PRED
CHEMBL1075138 Q9NUW8 Tyrosyl-DNA phosphodiesterase 1 5 nM
5 nM
Potency
Potency
via CMAUP
via Super-PRED

Predicted Targets (via Super-PRED):

CHEMBL ID UniProt ID Name Probability Model accuracy
CHEMBL5619 P27695 DNA-(apurinic or apyrimidinic site) lyase 96.23% 91.11%
CHEMBL3251 P19838 Nuclear factor NF-kappa-B p105 subunit 96.18% 96.09%
CHEMBL2581 P07339 Cathepsin D 93.79% 98.95%
CHEMBL3108638 O15164 Transcription intermediary factor 1-alpha 90.49% 95.56%
CHEMBL1806 P11388 DNA topoisomerase II alpha 90.02% 89.00%
CHEMBL1293249 Q13887 Kruppel-like factor 5 89.99% 86.33%
CHEMBL4481 P35228 Nitric oxide synthase, inducible 89.57% 94.80%
CHEMBL5608 Q16288 NT-3 growth factor receptor 89.56% 95.89%
CHEMBL241 Q14432 Phosphodiesterase 3A 87.90% 92.94%
CHEMBL2535 P11166 Glucose transporter 87.80% 98.75%
CHEMBL5311 P37023 Serine/threonine-protein kinase receptor R3 85.28% 82.67%
CHEMBL1994 P08235 Mineralocorticoid receptor 84.01% 100.00%
CHEMBL4478 Q00975 Voltage-gated N-type calcium channel alpha-1B subunit 82.85% 97.14%
CHEMBL3713062 P10646 Tissue factor pathway inhibitor 81.67% 97.33%
CHEMBL3060 Q9Y345 Glycine transporter 2 81.49% 99.17%
CHEMBL5339 Q5NUL3 G-protein coupled receptor 120 80.22% 95.78%

Cross-Links

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PubChem 6758
NPASS NPC298093
ChEMBL CHEMBL429023
LOTUS LTS0257248
wikiData Q412388