5-Deoxyribitol

Details

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Internal ID b8a31ace-bfb4-43e0-8031-11afd9112d4f
Taxonomy Organic oxygen compounds > Organooxygen compounds > Alcohols and polyols > Secondary alcohols
IUPAC Name (2R,3S,4S)-pentane-1,2,3,4-tetrol
SMILES (Canonical) CC(C(C(CO)O)O)O
SMILES (Isomeric) C[C@@H]([C@@H]([C@@H](CO)O)O)O
InChI InChI=1S/C5H12O4/c1-3(7)5(9)4(8)2-6/h3-9H,2H2,1H3/t3-,4+,5-/m0/s1
InChI Key FJGNTEKSQVNVTJ-LMVFSUKVSA-N
Popularity 41 references in papers

Physical and Chemical Properties

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Molecular Formula C5H12O4
Molecular Weight 136.15 g/mol
Exact Mass 136.07355886 g/mol
Topological Polar Surface Area (TPSA) 80.90 Ų
XlogP -1.90
Atomic LogP (AlogP) -1.92
H-Bond Acceptor 4
H-Bond Donor 4
Rotatable Bonds 3

Synonyms

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13046-76-9
5-Deoxy-D-ribitol
D-Ribitol, 1-deoxy-
(2R,3S,4S)-pentane-1,2,3,4-tetrol
(2R,3S,4S)-Pentane-1,2,3,4-tetraol
SCHEMBL1694138
DTXSID901316293

2D Structure

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2D Structure of 5-Deoxyribitol

3D Structure

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ADMET Properties (via admetSAR 2)

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Target Value Probability (raw) Probability (%)
Human Intestinal Absorption - 0.5459 54.59%
Caco-2 - 0.9077 90.77%
Blood Brain Barrier - 0.6250 62.50%
Human oral bioavailability - 0.6571 65.71%
Subcellular localzation Mitochondria 0.5448 54.48%
OATP2B1 inhibitior - 0.8533 85.33%
OATP1B1 inhibitior + 0.9542 95.42%
OATP1B3 inhibitior + 0.9458 94.58%
MATE1 inhibitior - 1.0000 100.00%
OCT2 inhibitior - 0.9750 97.50%
BSEP inhibitior - 0.9602 96.02%
P-glycoprotein inhibitior - 0.9845 98.45%
P-glycoprotein substrate - 0.9685 96.85%
CYP3A4 substrate - 0.7662 76.62%
CYP2C9 substrate - 0.8370 83.70%
CYP2D6 substrate - 0.7713 77.13%
CYP3A4 inhibition - 0.9174 91.74%
CYP2C9 inhibition - 0.9292 92.92%
CYP2C19 inhibition - 0.9365 93.65%
CYP2D6 inhibition - 0.9365 93.65%
CYP1A2 inhibition - 0.8629 86.29%
CYP2C8 inhibition - 0.9974 99.74%
CYP inhibitory promiscuity - 0.9501 95.01%
UGT catelyzed + 1.0000 100.00%
Carcinogenicity (binary) - 0.8600 86.00%
Carcinogenicity (trinary) Non-required 0.7483 74.83%
Eye corrosion - 0.9880 98.80%
Eye irritation - 0.8960 89.60%
Skin irritation - 0.7760 77.60%
Skin corrosion - 0.9652 96.52%
Ames mutagenesis - 0.9700 97.00%
Human Ether-a-go-go-Related Gene inhibition - 0.6388 63.88%
Micronuclear - 0.8800 88.00%
Hepatotoxicity - 0.8287 82.87%
skin sensitisation - 0.9301 93.01%
Respiratory toxicity - 0.5556 55.56%
Reproductive toxicity - 0.9222 92.22%
Mitochondrial toxicity + 0.6375 63.75%
Nephrotoxicity + 0.4698 46.98%
Acute Oral Toxicity (c) IV 0.8386 83.86%
Estrogen receptor binding - 0.9262 92.62%
Androgen receptor binding - 0.8838 88.38%
Thyroid receptor binding - 0.7793 77.93%
Glucocorticoid receptor binding - 0.8775 87.75%
Aromatase binding - 0.8865 88.65%
PPAR gamma - 0.9064 90.64%
Honey bee toxicity - 0.9745 97.45%
Biodegradation + 0.7500 75.00%
Crustacea aquatic toxicity - 0.9700 97.00%
Fish aquatic toxicity - 0.9622 96.22%

Targets

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Proven Targets:

CHEMBL ID UniProt ID Name Min activity Assay type Source
No proven targets yet!

Predicted Targets (via Super-PRED):

CHEMBL ID UniProt ID Name Probability Model accuracy
CHEMBL4040 P28482 MAP kinase ERK2 92.07% 83.82%
CHEMBL3251 P19838 Nuclear factor NF-kappa-B p105 subunit 90.96% 96.09%
CHEMBL253 P34972 Cannabinoid CB2 receptor 86.82% 97.25%
CHEMBL2581 P07339 Cathepsin D 86.72% 98.95%
CHEMBL2885 P07451 Carbonic anhydrase III 86.66% 87.45%
CHEMBL3892 Q99500 Sphingosine 1-phosphate receptor Edg-3 84.64% 97.29%

Cross-Links

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PubChem 166761
NPASS NPC296071