Xanthine

Details

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Internal ID c4c7a963-55d0-4e84-b88c-b3b2114996f3
Taxonomy Organoheterocyclic compounds > Imidazopyrimidines > Purines and purine derivatives > Xanthines
IUPAC Name 3,7-dihydropurine-2,6-dione
SMILES (Canonical) C1=NC2=C(N1)C(=O)NC(=O)N2
SMILES (Isomeric) C1=NC2=C(N1)C(=O)NC(=O)N2
InChI InChI=1S/C5H4N4O2/c10-4-2-3(7-1-6-2)8-5(11)9-4/h1H,(H3,6,7,8,9,10,11)
InChI Key LRFVTYWOQMYALW-UHFFFAOYSA-N
Popularity 18,133 references in papers

Physical and Chemical Properties

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Molecular Formula C5H4N4O2
Molecular Weight 152.11 g/mol
Exact Mass 152.03342538 g/mol
Topological Polar Surface Area (TPSA) 86.90 Ų
XlogP -0.70
Atomic LogP (AlogP) -1.06
H-Bond Acceptor 3
H-Bond Donor 3
Rotatable Bonds 0

Synonyms

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69-89-6
2,6-Dihydroxypurine
2,6-dioxopurine
1H-Purine-2,6(3H,7H)-dione
Isoxanthine
Xanthin
Xanthic oxide
Pseudoxanthine
1H-Purine-2,6-diol
9H-Purine-2,6-diol
There are more than 10 synonyms. If you wish to see them all click here.

2D Structure

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2D Structure of Xanthine

3D Structure

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ADMET Properties (via admetSAR 2)

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Target Value Probability (raw) Probability (%)
Human Intestinal Absorption + 0.9929 99.29%
Caco-2 - 0.9353 93.53%
Blood Brain Barrier + 0.8250 82.50%
Human oral bioavailability + 0.6000 60.00%
Subcellular localzation Mitochondria 0.5297 52.97%
OATP2B1 inhibitior - 1.0000 100.00%
OATP1B1 inhibitior + 0.9663 96.63%
OATP1B3 inhibitior + 0.9522 95.22%
MATE1 inhibitior - 1.0000 100.00%
OCT2 inhibitior - 0.9750 97.50%
BSEP inhibitior - 0.9191 91.91%
P-glycoprotein inhibitior - 0.9869 98.69%
P-glycoprotein substrate - 0.9552 95.52%
CYP3A4 substrate - 0.6789 67.89%
CYP2C9 substrate - 0.6203 62.03%
CYP2D6 substrate - 0.8687 86.87%
CYP3A4 inhibition - 0.8998 89.98%
CYP2C9 inhibition - 0.8946 89.46%
CYP2C19 inhibition - 0.8748 87.48%
CYP2D6 inhibition - 0.9138 91.38%
CYP1A2 inhibition + 0.5750 57.50%
CYP2C8 inhibition - 0.9751 97.51%
CYP inhibitory promiscuity - 0.9936 99.36%
UGT catelyzed - 0.0000 0.00%
Carcinogenicity (binary) - 0.9223 92.23%
Carcinogenicity (trinary) Non-required 0.6956 69.56%
Eye corrosion - 0.9843 98.43%
Eye irritation + 0.6564 65.64%
Skin irritation - 0.8722 87.22%
Skin corrosion - 0.9696 96.96%
Ames mutagenesis - 0.6200 62.00%
Human Ether-a-go-go-Related Gene inhibition - 0.6959 69.59%
Micronuclear + 0.9200 92.00%
Hepatotoxicity + 0.6875 68.75%
skin sensitisation - 0.9382 93.82%
Respiratory toxicity + 0.7111 71.11%
Reproductive toxicity + 0.6667 66.67%
Mitochondrial toxicity + 0.6375 63.75%
Nephrotoxicity + 0.4938 49.38%
Acute Oral Toxicity (c) III 0.6551 65.51%
Estrogen receptor binding - 0.8940 89.40%
Androgen receptor binding - 0.6967 69.67%
Thyroid receptor binding - 0.6769 67.69%
Glucocorticoid receptor binding - 0.9155 91.55%
Aromatase binding - 0.5379 53.79%
PPAR gamma - 0.7796 77.96%
Honey bee toxicity - 0.8622 86.22%
Biodegradation - 0.5000 50.00%
Crustacea aquatic toxicity - 0.6900 69.00%
Fish aquatic toxicity - 0.8618 86.18%

Targets

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Proven Targets:

CHEMBL ID UniProt ID Name Min activity Assay type Source
CHEMBL220 P22303 Acetylcholinesterase 9000 nM
IC50
PMID: 23791077
CHEMBL3129 Q9Y2T3 Guanine deaminase 1960 nM
Ki
PMID: 20716488

Predicted Targets (via Super-PRED):

CHEMBL ID UniProt ID Name Probability Model accuracy
CHEMBL255 P29275 Adenosine A2b receptor 94.84% 98.59%
CHEMBL1937 Q92769 Histone deacetylase 2 92.31% 94.75%
CHEMBL1293267 Q9HC97 G-protein coupled receptor 35 89.38% 89.34%
CHEMBL262 P49841 Glycogen synthase kinase-3 beta 87.94% 95.72%
CHEMBL3108638 O15164 Transcription intermediary factor 1-alpha 87.22% 95.56%
CHEMBL3038477 P67870 Casein kinase II alpha/beta 86.92% 99.23%
CHEMBL4261 Q16665 Hypoxia-inducible factor 1 alpha 86.25% 85.14%
CHEMBL4070 P19784 Casein kinase II alpha (prime) 84.15% 91.67%
CHEMBL213 P08588 Beta-1 adrenergic receptor 82.38% 95.56%
CHEMBL1907600 Q00535 Cyclin-dependent kinase 5/CDK5 activator 1 81.46% 93.03%
CHEMBL3310 Q96DB2 Histone deacetylase 11 81.42% 88.56%
CHEMBL4203 Q9HAZ1 Dual specificity protein kinase CLK4 80.95% 94.45%
CHEMBL2635 P51452 Dual specificity protein phosphatase 3 80.34% 94.00%
CHEMBL2292 Q13627 Dual-specificity tyrosine-phosphorylation regulated kinase 1A 80.20% 93.24%

Plants that contains it

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Cross-Links

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PubChem 1188
NPASS NPC287876
ChEMBL CHEMBL1424
LOTUS LTS0270384
wikiData Q50980