Secoxyloganin

Details

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Internal ID 6c2d84d9-e188-4b8a-9d48-31826e8c4eae
Taxonomy Lipids and lipid-like molecules > Prenol lipids > Terpene glycosides
IUPAC Name 2-[(2S,3R,4S)-3-ethenyl-5-methoxycarbonyl-2-[(2S,3R,4S,5S,6R)-3,4,5-trihydroxy-6-(hydroxymethyl)oxan-2-yl]oxy-3,4-dihydro-2H-pyran-4-yl]acetic acid
SMILES (Canonical) COC(=O)C1=COC(C(C1CC(=O)O)C=C)OC2C(C(C(C(O2)CO)O)O)O
SMILES (Isomeric) COC(=O)C1=CO[C@H]([C@@H]([C@@H]1CC(=O)O)C=C)O[C@H]2[C@@H]([C@H]([C@@H]([C@H](O2)CO)O)O)O
InChI InChI=1S/C17H24O11/c1-3-7-8(4-11(19)20)9(15(24)25-2)6-26-16(7)28-17-14(23)13(22)12(21)10(5-18)27-17/h3,6-8,10,12-14,16-18,21-23H,1,4-5H2,2H3,(H,19,20)/t7-,8+,10-,12-,13+,14-,16+,17+/m1/s1
InChI Key MQLSOVRLZHTATK-PEYNGXJCSA-N
Popularity 16 references in papers

Physical and Chemical Properties

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Molecular Formula C17H24O11
Molecular Weight 404.40 g/mol
Exact Mass 404.13186158 g/mol
Topological Polar Surface Area (TPSA) 172.00 Ų
XlogP -1.60
Atomic LogP (AlogP) -1.89
H-Bond Acceptor 10
H-Bond Donor 5
Rotatable Bonds 7

Synonyms

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58822-47-2
Secoxy-loganin
65J8K23L9L
UNII-65J8K23L9L
CHEBI:132712
SECOLOGANOSIDE 11-METHYL ESTER
2-[(2S,3R,4S)-3-ethenyl-5-methoxycarbonyl-2-[(2S,3R,4S,5S,6R)-3,4,5-trihydroxy-6-(hydroxymethyl)oxan-2-yl]oxy-3,4-dihydro-2H-pyran-4-yl]acetic acid
(2S,3R,4S)-3-ethenyl-2-(beta-D-glucopyranosyloxy)-3,4-dihydro-5-(methoxycarbonyl)-2H-pyran-4-acetic acid
(2S-(2alpha,3beta,4beta))-3-Ethenyl-2-(beta-D-glucopyranosyloxy)-3,4-dihydro-5-(methoxycarbonyl)-2H-pyran-4-acetic acid
MEGxp0_000724
There are more than 10 synonyms. If you wish to see them all click here.

2D Structure

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2D Structure of Secoxyloganin

3D Structure

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ADMET Properties (via admetSAR 2)

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Target Value Probability (raw) Probability (%)
Human Intestinal Absorption - 0.7894 78.94%
Caco-2 - 0.8757 87.57%
Blood Brain Barrier - 0.6250 62.50%
Human oral bioavailability - 0.8143 81.43%
Subcellular localzation Mitochondria 0.6829 68.29%
OATP2B1 inhibitior - 0.8597 85.97%
OATP1B1 inhibitior + 0.7311 73.11%
OATP1B3 inhibitior + 0.9586 95.86%
MATE1 inhibitior - 0.9800 98.00%
OCT2 inhibitior - 0.8750 87.50%
BSEP inhibitior - 0.8847 88.47%
P-glycoprotein inhibitior - 0.8401 84.01%
P-glycoprotein substrate - 0.8216 82.16%
CYP3A4 substrate + 0.5823 58.23%
CYP2C9 substrate - 1.0000 100.00%
CYP2D6 substrate - 0.8793 87.93%
CYP3A4 inhibition - 0.8646 86.46%
CYP2C9 inhibition - 0.8989 89.89%
CYP2C19 inhibition - 0.8975 89.75%
CYP2D6 inhibition - 0.9231 92.31%
CYP1A2 inhibition - 0.9413 94.13%
CYP2C8 inhibition - 0.6309 63.09%
CYP inhibitory promiscuity - 0.9393 93.93%
UGT catelyzed - 0.5000 50.00%
Carcinogenicity (binary) - 0.9800 98.00%
Carcinogenicity (trinary) Non-required 0.7509 75.09%
Eye corrosion - 0.9862 98.62%
Eye irritation - 0.9338 93.38%
Skin irritation - 0.8018 80.18%
Skin corrosion - 0.9426 94.26%
Ames mutagenesis - 0.5770 57.70%
Human Ether-a-go-go-Related Gene inhibition - 0.6475 64.75%
Micronuclear - 0.6382 63.82%
Hepatotoxicity - 0.6966 69.66%
skin sensitisation - 0.8660 86.60%
Respiratory toxicity - 0.5556 55.56%
Reproductive toxicity + 0.5889 58.89%
Mitochondrial toxicity - 0.5250 52.50%
Nephrotoxicity + 0.4763 47.63%
Acute Oral Toxicity (c) III 0.5721 57.21%
Estrogen receptor binding + 0.5843 58.43%
Androgen receptor binding - 0.5505 55.05%
Thyroid receptor binding - 0.5217 52.17%
Glucocorticoid receptor binding + 0.5752 57.52%
Aromatase binding + 0.5767 57.67%
PPAR gamma - 0.5071 50.71%
Honey bee toxicity - 0.8290 82.90%
Biodegradation - 0.5750 57.50%
Crustacea aquatic toxicity - 0.8500 85.00%
Fish aquatic toxicity - 0.4750 47.50%

Targets

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Proven Targets:

CHEMBL ID UniProt ID Name Min activity Assay type Source
No proven targets yet!

Predicted Targets (via Super-PRED):

CHEMBL ID UniProt ID Name Probability Model accuracy
CHEMBL3251 P19838 Nuclear factor NF-kappa-B p105 subunit 96.28% 96.09%
CHEMBL5619 P27695 DNA-(apurinic or apyrimidinic site) lyase 93.24% 91.11%
CHEMBL3401 O75469 Pregnane X receptor 89.54% 94.73%
CHEMBL3060 Q9Y345 Glycine transporter 2 88.13% 99.17%
CHEMBL2581 P07339 Cathepsin D 87.39% 98.95%
CHEMBL1075094 Q16236 Nuclear factor erythroid 2-related factor 2 86.83% 96.00%
CHEMBL4016 P42262 Glutamate receptor ionotropic, AMPA 2 84.18% 86.92%
CHEMBL5028 O14672 ADAM10 83.47% 97.50%
CHEMBL1293249 Q13887 Kruppel-like factor 5 83.13% 86.33%
CHEMBL4208 P20618 Proteasome component C5 80.95% 90.00%

Cross-Links

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PubChem 162868
NPASS NPC232954
LOTUS LTS0101012
wikiData Q72507279