ginsenoside C-Y

Details

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Internal ID e068e2b5-bb55-4927-9bcd-0c91925527da
Taxonomy Lipids and lipid-like molecules > Prenol lipids > Terpene glycosides > Triterpene glycosides > Triterpene saponins
IUPAC Name (2S,3R,4S,5S,6R)-2-[(2S)-2-[(3S,5R,8R,9R,10R,12R,13R,14R,17S)-3,12-dihydroxy-4,4,8,10,14-pentamethyl-2,3,5,6,7,9,11,12,13,15,16,17-dodecahydro-1H-cyclopenta[a]phenanthren-17-yl]-6-methylhept-5-en-2-yl]oxy-6-[[(2S,3R,4S,5S)-3,4,5-trihydroxyoxan-2-yl]oxymethyl]oxane-3,4,5-triol
SMILES (Canonical) CC(=CCCC(C)(C1CCC2(C1C(CC3C2(CCC4C3(CCC(C4(C)C)O)C)C)O)C)OC5C(C(C(C(O5)COC6C(C(C(CO6)O)O)O)O)O)O)C
SMILES (Isomeric) CC(=CCC[C@@](C)([C@H]1CC[C@@]2([C@@H]1[C@@H](C[C@H]3[C@]2(CC[C@@H]4[C@@]3(CC[C@@H](C4(C)C)O)C)C)O)C)O[C@H]5[C@@H]([C@H]([C@@H]([C@H](O5)CO[C@H]6[C@@H]([C@H]([C@H](CO6)O)O)O)O)O)O)C
InChI InChI=1S/C41H70O12/c1-21(2)10-9-14-41(8,53-36-34(49)32(47)31(46)25(52-36)20-51-35-33(48)30(45)24(43)19-50-35)22-11-16-40(7)29(22)23(42)18-27-38(5)15-13-28(44)37(3,4)26(38)12-17-39(27,40)6/h10,22-36,42-49H,9,11-20H2,1-8H3/t22-,23+,24-,25+,26-,27+,28-,29-,30-,31+,32-,33+,34+,35-,36-,38-,39+,40+,41-/m0/s1
InChI Key YNBYFOIDLBTOMW-QHNUHGIDSA-N
Popularity 3 references in papers

Physical and Chemical Properties

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Molecular Formula C41H70O12
Molecular Weight 755.00 g/mol
Exact Mass 754.48672766 g/mol
Topological Polar Surface Area (TPSA) 199.00 Ų
XlogP 3.50
Atomic LogP (AlogP) 2.79
H-Bond Acceptor 12
H-Bond Donor 8
Rotatable Bonds 9

Synonyms

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ginsenoside Y
83480-65-3
beta-D-Glucopyranoside, (3beta,12beta)-3,12-dihydroxydammar-24-en-20-yl 6-O-alpha-L-arabinopyranosyl-
ginsenoside compound Y
(20S)-ginsenoside C-Y
CHEBI:77157
DTXSID601317480
AKOS040758373
Q27146722
20-(6-O-alpha-L-Arabinopyranosyl-beta-D-glucopyranosyloxy)dammar-24-ene-3beta,12beta-diol
There are more than 10 synonyms. If you wish to see them all click here.

2D Structure

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2D Structure of ginsenoside C-Y

3D Structure

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ADMET Properties (via admetSAR 2)

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Target Value Probability (raw) Probability (%)
Human Intestinal Absorption + 0.7409 74.09%
Caco-2 - 0.8832 88.32%
Blood Brain Barrier - 0.5750 57.50%
Human oral bioavailability - 0.6714 67.14%
Subcellular localzation Mitochondria 0.7439 74.39%
OATP2B1 inhibitior - 1.0000 100.00%
OATP1B1 inhibitior + 0.8446 84.46%
OATP1B3 inhibitior + 0.8566 85.66%
MATE1 inhibitior - 0.9800 98.00%
OCT2 inhibitior - 0.6750 67.50%
BSEP inhibitior - 0.5464 54.64%
P-glycoprotein inhibitior + 0.7872 78.72%
P-glycoprotein substrate - 0.6679 66.79%
CYP3A4 substrate + 0.7195 71.95%
CYP2C9 substrate - 0.8028 80.28%
CYP2D6 substrate - 0.8179 81.79%
CYP3A4 inhibition - 0.9623 96.23%
CYP2C9 inhibition - 0.8595 85.95%
CYP2C19 inhibition - 0.8831 88.31%
CYP2D6 inhibition - 0.9368 93.68%
CYP1A2 inhibition - 0.9048 90.48%
CYP2C8 inhibition + 0.6409 64.09%
CYP inhibitory promiscuity - 0.9359 93.59%
UGT catelyzed + 0.7000 70.00%
Carcinogenicity (binary) - 0.9900 99.00%
Carcinogenicity (trinary) Non-required 0.6375 63.75%
Eye corrosion - 0.9908 99.08%
Eye irritation - 0.9131 91.31%
Skin irritation - 0.5820 58.20%
Skin corrosion - 0.9477 94.77%
Ames mutagenesis - 0.5454 54.54%
Human Ether-a-go-go-Related Gene inhibition + 0.7974 79.74%
Micronuclear - 0.8700 87.00%
Hepatotoxicity + 0.6243 62.43%
skin sensitisation - 0.8844 88.44%
Respiratory toxicity + 0.6000 60.00%
Reproductive toxicity + 0.8778 87.78%
Mitochondrial toxicity + 0.5375 53.75%
Nephrotoxicity - 0.8589 85.89%
Acute Oral Toxicity (c) I 0.6012 60.12%
Estrogen receptor binding + 0.7133 71.33%
Androgen receptor binding + 0.7187 71.87%
Thyroid receptor binding - 0.5814 58.14%
Glucocorticoid receptor binding + 0.6422 64.22%
Aromatase binding + 0.6972 69.72%
PPAR gamma + 0.7217 72.17%
Honey bee toxicity - 0.5934 59.34%
Biodegradation - 0.7500 75.00%
Crustacea aquatic toxicity + 0.5400 54.00%
Fish aquatic toxicity + 0.9532 95.32%

Targets

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Proven Targets:

CHEMBL ID UniProt ID Name Min activity Assay type Source
No proven targets yet!

Predicted Targets (via Super-PRED):

CHEMBL ID UniProt ID Name Probability Model accuracy
CHEMBL253 P34972 Cannabinoid CB2 receptor 98.43% 97.25%
CHEMBL5619 P27695 DNA-(apurinic or apyrimidinic site) lyase 97.65% 91.11%
CHEMBL226 P30542 Adenosine A1 receptor 95.40% 95.93%
CHEMBL3137262 O60341 LSD1/CoREST complex 94.75% 97.09%
CHEMBL4026 P40763 Signal transducer and activator of transcription 3 91.56% 82.69%
CHEMBL2179 P04062 Beta-glucocerebrosidase 90.96% 85.31%
CHEMBL1994 P08235 Mineralocorticoid receptor 89.96% 100.00%
CHEMBL1293249 Q13887 Kruppel-like factor 5 89.85% 86.33%
CHEMBL3251 P19838 Nuclear factor NF-kappa-B p105 subunit 89.78% 96.09%
CHEMBL241 Q14432 Phosphodiesterase 3A 87.98% 92.94%
CHEMBL5608 Q16288 NT-3 growth factor receptor 87.89% 95.89%
CHEMBL4187 Q99250 Sodium channel protein type II alpha subunit 86.91% 95.50%
CHEMBL4203 Q9HAZ1 Dual specificity protein kinase CLK4 86.24% 94.45%
CHEMBL2581 P07339 Cathepsin D 85.36% 98.95%
CHEMBL5028 O14672 ADAM10 83.50% 97.50%
CHEMBL218 P21554 Cannabinoid CB1 receptor 83.39% 96.61%
CHEMBL5163 Q9NY46 Sodium channel protein type III alpha subunit 83.09% 96.90%
CHEMBL1937 Q92769 Histone deacetylase 2 82.75% 94.75%
CHEMBL4657 Q6V1X1 Dipeptidyl peptidase VIII 82.32% 97.21%
CHEMBL3714130 P46095 G-protein coupled receptor 6 82.25% 97.36%
CHEMBL5888 Q99558 Mitogen-activated protein kinase kinase kinase 14 81.90% 100.00%
CHEMBL344 Q99705 Melanin-concentrating hormone receptor 1 81.71% 92.50%
CHEMBL2373 P21730 C5a anaphylatoxin chemotactic receptor 80.98% 92.62%
CHEMBL5957 P21589 5'-nucleotidase 80.86% 97.78%
CHEMBL1871 P10275 Androgen Receptor 80.83% 96.43%
CHEMBL1075162 Q13304 Uracil nucleotide/cysteinyl leukotriene receptor 80.52% 80.33%
CHEMBL4478 Q00975 Voltage-gated N-type calcium channel alpha-1B subunit 80.04% 97.14%

Cross-Links

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PubChem 21672570
NPASS NPC230896