Cyanidin 3-arabinoside cation

Details

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Internal ID a21fa4f6-bba1-4c50-971f-c976f33dd7a9
Taxonomy Phenylpropanoids and polyketides > Flavonoids > Flavonoid glycosides > Flavonoid O-glycosides > Flavonoid-3-O-glycosides
IUPAC Name (2S,3R,4S,5S)-2-[2-(3,4-dihydroxyphenyl)-5,7-dihydroxychromenylium-3-yl]oxyoxane-3,4,5-triol
SMILES (Canonical) C1C(C(C(C(O1)OC2=CC3=C(C=C(C=C3[O+]=C2C4=CC(=C(C=C4)O)O)O)O)O)O)O
SMILES (Isomeric) C1[C@@H]([C@@H]([C@H]([C@@H](O1)OC2=CC3=C(C=C(C=C3[O+]=C2C4=CC(=C(C=C4)O)O)O)O)O)O)O
InChI InChI=1S/C20H18O10/c21-9-4-12(23)10-6-16(30-20-18(27)17(26)14(25)7-28-20)19(29-15(10)5-9)8-1-2-11(22)13(24)3-8/h1-6,14,17-18,20,25-27H,7H2,(H3-,21,22,23,24)/p+1/t14-,17-,18+,20-/m0/s1
InChI Key KUCVMQMKRICXJC-DEYWJSPQSA-O
Popularity 0 references in papers

Physical and Chemical Properties

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Molecular Formula C20H19O10+
Molecular Weight 419.40 g/mol
Exact Mass 419.09782180 g/mol
Topological Polar Surface Area (TPSA) 161.00 Ų
XlogP 0.00
Atomic LogP (AlogP) 1.02
H-Bond Acceptor 9
H-Bond Donor 7
Rotatable Bonds 3

Synonyms

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792868-19-0
Cyanidin 3-O-arabinoside
Cyanidin-3-o-arabinoside cation
UNII-PHW58C53PO
PHW58C53PO
Cyanidin-3-O-alpha-arabinopyranoside
1-Benzopyrylium, 3-(arabinosyloxy)-2-(3,4-dihydroxyphenyl)-5,7-dihydroxy-
(2S,3R,4S,5S)-2-[2-(3,4-dihydroxyphenyl)-5,7-dihydroxychromenylium-3-yl]oxyoxane-3,4,5-triol
1-Benzopyrylium, 3-(alpha-L-arabinopyranosyloxy)-2-(3,4-dihydroxyphenyl)-5,7-dihydroxy-
3-(alpha-L-arabinopyranosyloxy)-2-(3,4-dihydroxyphenyl)-5,7-dihydroxy-1-benzopyrylium
There are more than 10 synonyms. If you wish to see them all click here.

2D Structure

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2D Structure of Cyanidin 3-arabinoside cation

3D Structure

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ADMET Properties (via admetSAR 2)

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Target Value Probability (raw) Probability (%)
Human Intestinal Absorption - 0.6551 65.51%
Caco-2 - 0.8460 84.60%
Blood Brain Barrier - 0.6000 60.00%
Human oral bioavailability - 0.6714 67.14%
Subcellular localzation Nucleus 0.4297 42.97%
OATP2B1 inhibitior + 0.5839 58.39%
OATP1B1 inhibitior + 0.9493 94.93%
OATP1B3 inhibitior + 0.8728 87.28%
MATE1 inhibitior - 0.8800 88.00%
OCT2 inhibitior - 0.8000 80.00%
BSEP inhibitior - 0.5723 57.23%
P-glycoprotein inhibitior - 0.6063 60.63%
P-glycoprotein substrate - 0.7555 75.55%
CYP3A4 substrate + 0.5967 59.67%
CYP2C9 substrate - 0.8065 80.65%
CYP2D6 substrate - 0.8214 82.14%
CYP3A4 inhibition - 0.9605 96.05%
CYP2C9 inhibition - 0.9224 92.24%
CYP2C19 inhibition - 0.8631 86.31%
CYP2D6 inhibition - 0.8770 87.70%
CYP1A2 inhibition - 0.8966 89.66%
CYP2C8 inhibition + 0.8093 80.93%
CYP inhibitory promiscuity - 0.9158 91.58%
UGT catelyzed + 0.6000 60.00%
Carcinogenicity (binary) - 0.9900 99.00%
Carcinogenicity (trinary) Non-required 0.6004 60.04%
Eye corrosion - 0.9921 99.21%
Eye irritation - 0.7034 70.34%
Skin irritation - 0.7721 77.21%
Skin corrosion - 0.9526 95.26%
Ames mutagenesis + 0.6100 61.00%
Human Ether-a-go-go-Related Gene inhibition - 0.4725 47.25%
Micronuclear + 0.7359 73.59%
Hepatotoxicity - 0.6321 63.21%
skin sensitisation - 0.8949 89.49%
Respiratory toxicity + 0.5556 55.56%
Reproductive toxicity + 0.7889 78.89%
Mitochondrial toxicity - 0.5000 50.00%
Nephrotoxicity - 0.8938 89.38%
Acute Oral Toxicity (c) III 0.5012 50.12%
Estrogen receptor binding + 0.7848 78.48%
Androgen receptor binding + 0.7113 71.13%
Thyroid receptor binding + 0.5983 59.83%
Glucocorticoid receptor binding + 0.7270 72.70%
Aromatase binding + 0.7025 70.25%
PPAR gamma + 0.7534 75.34%
Honey bee toxicity - 0.7087 70.87%
Biodegradation - 0.7000 70.00%
Crustacea aquatic toxicity + 0.5251 52.51%
Fish aquatic toxicity + 0.8012 80.12%

Targets

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Proven Targets:

CHEMBL ID UniProt ID Name Min activity Assay type Source
No proven targets yet!

Predicted Targets (via Super-PRED):

CHEMBL ID UniProt ID Name Probability Model accuracy
CHEMBL5619 P27695 DNA-(apurinic or apyrimidinic site) lyase 99.40% 91.11%
CHEMBL1951 P21397 Monoamine oxidase A 98.39% 91.49%
CHEMBL1860 P10827 Thyroid hormone receptor alpha 94.33% 99.15%
CHEMBL1806 P11388 DNA topoisomerase II alpha 93.64% 89.00%
CHEMBL241 Q14432 Phosphodiesterase 3A 93.41% 92.94%
CHEMBL5339 Q5NUL3 G-protein coupled receptor 120 91.65% 95.78%
CHEMBL3251 P19838 Nuclear factor NF-kappa-B p105 subunit 89.10% 96.09%
CHEMBL225 P28335 Serotonin 2c (5-HT2c) receptor 89.08% 89.62%
CHEMBL1929 P47989 Xanthine dehydrogenase 87.86% 96.12%
CHEMBL2635 P51452 Dual specificity protein phosphatase 3 87.81% 94.00%
CHEMBL3137262 O60341 LSD1/CoREST complex 86.18% 97.09%
CHEMBL3194 P02766 Transthyretin 84.96% 90.71%
CHEMBL5608 Q16288 NT-3 growth factor receptor 84.46% 95.89%
CHEMBL4203 Q9HAZ1 Dual specificity protein kinase CLK4 83.22% 94.45%
CHEMBL2581 P07339 Cathepsin D 83.11% 98.95%
CHEMBL1293249 Q13887 Kruppel-like factor 5 82.85% 86.33%
CHEMBL3476 O15111 Inhibitor of nuclear factor kappa B kinase alpha subunit 81.66% 95.83%
CHEMBL213 P08588 Beta-1 adrenergic receptor 81.33% 95.56%
CHEMBL3108638 O15164 Transcription intermediary factor 1-alpha 80.64% 95.56%
CHEMBL204 P00734 Thrombin 80.60% 96.01%

Cross-Links

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PubChem 12137509
NPASS NPC286956