Agmatine

Details

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Internal ID 9a4254f7-a651-450f-b2aa-460dbc7fbba9
Taxonomy Organic nitrogen compounds > Organonitrogen compounds > Guanidines
IUPAC Name 2-(4-aminobutyl)guanidine
SMILES (Canonical) C(CCN=C(N)N)CN
SMILES (Isomeric) C(CCN=C(N)N)CN
InChI InChI=1S/C5H14N4/c6-3-1-2-4-9-5(7)8/h1-4,6H2,(H4,7,8,9)
InChI Key QYPPJABKJHAVHS-UHFFFAOYSA-N
Popularity 2,905 references in papers

Physical and Chemical Properties

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Molecular Formula C5H14N4
Molecular Weight 130.19 g/mol
Exact Mass 130.121846464 g/mol
Topological Polar Surface Area (TPSA) 90.40 Ų
XlogP -1.50
Atomic LogP (AlogP) -1.00
H-Bond Acceptor 2
H-Bond Donor 3
Rotatable Bonds 4

Synonyms

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1-(4-Aminobutyl)guanidine
306-60-5
(4-Aminobutyl)guanidine
Argmatine
1-Amino-4-guanidobutane
N-(4-aminobutyl)guanidine
N-4-Aminobutylguanidine
guanidine, (4-aminobutyl)-
2-(4-aminobutyl)guanidine
(4-Aminobutyl) guanidine
There are more than 10 synonyms. If you wish to see them all click here.

2D Structure

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2D Structure of Agmatine

3D Structure

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ADMET Properties (via admetSAR 2)

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Target Value Probability (raw) Probability (%)
Human Intestinal Absorption + 0.8588 85.88%
Caco-2 + 0.5952 59.52%
Blood Brain Barrier - 0.6250 62.50%
Human oral bioavailability + 0.8286 82.86%
Subcellular localzation Lysosomes 0.6929 69.29%
OATP2B1 inhibitior - 0.8631 86.31%
OATP1B1 inhibitior + 0.9551 95.51%
OATP1B3 inhibitior + 0.9487 94.87%
MATE1 inhibitior - 0.8400 84.00%
OCT2 inhibitior - 0.6500 65.00%
BSEP inhibitior - 0.9557 95.57%
P-glycoprotein inhibitior - 0.9825 98.25%
P-glycoprotein substrate - 0.8915 89.15%
CYP3A4 substrate - 0.7594 75.94%
CYP2C9 substrate - 1.0000 100.00%
CYP2D6 substrate + 0.4272 42.72%
CYP3A4 inhibition - 0.9428 94.28%
CYP2C9 inhibition - 0.9396 93.96%
CYP2C19 inhibition - 0.9261 92.61%
CYP2D6 inhibition - 0.9231 92.31%
CYP1A2 inhibition - 0.8126 81.26%
CYP2C8 inhibition - 0.9685 96.85%
CYP inhibitory promiscuity - 0.9583 95.83%
UGT catelyzed - 0.0000 0.00%
Carcinogenicity (binary) - 0.9100 91.00%
Carcinogenicity (trinary) Non-required 0.6083 60.83%
Eye corrosion - 0.8767 87.67%
Eye irritation + 0.5948 59.48%
Skin irritation + 0.7363 73.63%
Skin corrosion + 0.7879 78.79%
Ames mutagenesis + 0.5400 54.00%
Human Ether-a-go-go-Related Gene inhibition - 0.5997 59.97%
Micronuclear - 0.6600 66.00%
Hepatotoxicity - 0.7875 78.75%
skin sensitisation - 0.7194 71.94%
Respiratory toxicity + 0.5444 54.44%
Reproductive toxicity - 0.7661 76.61%
Mitochondrial toxicity + 0.6250 62.50%
Nephrotoxicity + 0.6499 64.99%
Acute Oral Toxicity (c) II 0.7267 72.67%
Estrogen receptor binding - 0.8771 87.71%
Androgen receptor binding - 0.8761 87.61%
Thyroid receptor binding - 0.8031 80.31%
Glucocorticoid receptor binding - 0.8404 84.04%
Aromatase binding - 0.7840 78.40%
PPAR gamma - 0.9110 91.10%
Honey bee toxicity - 0.9396 93.96%
Biodegradation + 0.5500 55.00%
Crustacea aquatic toxicity - 0.6500 65.00%
Fish aquatic toxicity - 0.9182 91.82%

Targets

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Proven Targets:

CHEMBL ID UniProt ID Name Min activity Assay type Source
CHEMBL2903 P16050 Arachidonate 15-lipoxygenase 12589.3 nM
Potency
via CMAUP
CHEMBL3356 P05177 Cytochrome P450 1A2 31622.78 nM
AC50
via CMAUP
CHEMBL3251 P19838 Nuclear factor NF-kappa-B p105 subunit 354.8 nM
354.8 nM
354.8 nM
Potency
Potency
Potency
via CMAUP
via CMAUP
via Super-PRED

Predicted Targets (via Super-PRED):

CHEMBL ID UniProt ID Name Probability Model accuracy
CHEMBL5619 P27695 DNA-(apurinic or apyrimidinic site) lyase 92.77% 91.11%
CHEMBL2885 P07451 Carbonic anhydrase III 89.93% 87.45%
CHEMBL4581 P52732 Kinesin-like protein 1 85.49% 93.18%
CHEMBL3492 P49721 Proteasome Macropain subunit 83.22% 90.24%
CHEMBL4793 Q86TI2 Dipeptidyl peptidase IX 82.12% 96.95%
CHEMBL3060 Q9Y345 Glycine transporter 2 81.93% 99.17%
CHEMBL3038469 P24941 CDK2/Cyclin A 80.63% 91.38%

Cross-Links

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PubChem 199
NPASS NPC163099
ChEMBL CHEMBL58343
LOTUS LTS0244944
wikiData Q394317