(R)-1-(5,8-Dihydroxy-1,4-dioxo-1,4-dihydronaphthalen-2-yl)-4-methylpent-3-en-1-yl acetate

Details

Top
Internal ID 6d4ded66-559a-474b-82c5-7608dcb62e63
Taxonomy Benzenoids > Naphthalenes > Naphthoquinones
IUPAC Name [(1R)-1-(5,8-dihydroxy-1,4-dioxonaphthalen-2-yl)-4-methylpent-3-enyl] acetate
SMILES (Canonical) CC(=CCC(C1=CC(=O)C2=C(C=CC(=C2C1=O)O)O)OC(=O)C)C
SMILES (Isomeric) CC(=CC[C@H](C1=CC(=O)C2=C(C=CC(=C2C1=O)O)O)OC(=O)C)C
InChI InChI=1S/C18H18O6/c1-9(2)4-7-15(24-10(3)19)11-8-14(22)16-12(20)5-6-13(21)17(16)18(11)23/h4-6,8,15,20-21H,7H2,1-3H3/t15-/m1/s1
InChI Key WNFXUXZJJKTDOZ-OAHLLOKOSA-N
Popularity 174 references in papers

Physical and Chemical Properties

Top
Molecular Formula C18H18O6
Molecular Weight 330.30 g/mol
Exact Mass 330.11033829 g/mol
Topological Polar Surface Area (TPSA) 101.00 Ų
XlogP 3.50
Atomic LogP (AlogP) 2.69
H-Bond Acceptor 6
H-Bond Donor 2
Rotatable Bonds 4

Synonyms

Top
24502-78-1
(R)-1-(5,8-Dihydroxy-1,4-dioxo-1,4-dihydronaphthalen-2-yl)-4-methylpent-3-en-1-yl acetate
acetyl shikonin
Shikonin, acetyl
[(1R)-1-(5,8-dihydroxy-1,4-dioxonaphthalen-2-yl)-4-methylpent-3-enyl] acetate
NSC 110199
(+)-5,8-Dihydroxy-2-(1-hydroxy-4-methyl-3-pentenyl)-1,4-naphthoquinone 2-acetate
SCHEMBL219826
1,4-Naphthalenedione, 2-(1-(acetyloxy)-4-methyl-3-pentenyl)-5,8-dihydroxy-, (R)-
1,4-Naphthalenedione, 2-[1-(acetyloxy)-4-methyl-3-pentenyl]-5,8-dihydroxy-, (R)-
There are more than 10 synonyms. If you wish to see them all click here.

2D Structure

Top
2D Structure of (R)-1-(5,8-Dihydroxy-1,4-dioxo-1,4-dihydronaphthalen-2-yl)-4-methylpent-3-en-1-yl acetate

3D Structure

Top

ADMET Properties (via admetSAR 2)

Top
Target Value Probability (raw) Probability (%)
Human Intestinal Absorption + 0.9959 99.59%
Caco-2 + 0.5783 57.83%
Blood Brain Barrier - 0.5750 57.50%
Human oral bioavailability - 0.7000 70.00%
Subcellular localzation Mitochondria 0.8414 84.14%
OATP2B1 inhibitior - 0.7178 71.78%
OATP1B1 inhibitior + 0.9323 93.23%
OATP1B3 inhibitior + 0.8085 80.85%
MATE1 inhibitior - 0.6800 68.00%
OCT2 inhibitior - 0.9250 92.50%
BSEP inhibitior - 0.5000 50.00%
P-glycoprotein inhibitior - 0.7715 77.15%
P-glycoprotein substrate - 0.9231 92.31%
CYP3A4 substrate - 0.5068 50.68%
CYP2C9 substrate - 0.7904 79.04%
CYP2D6 substrate - 0.8786 87.86%
CYP3A4 inhibition - 0.8377 83.77%
CYP2C9 inhibition + 0.7155 71.55%
CYP2C19 inhibition + 0.5930 59.30%
CYP2D6 inhibition - 0.7088 70.88%
CYP1A2 inhibition + 0.6540 65.40%
CYP2C8 inhibition - 0.8442 84.42%
CYP inhibitory promiscuity + 0.6283 62.83%
UGT catelyzed + 0.6000 60.00%
Carcinogenicity (binary) - 0.8822 88.22%
Carcinogenicity (trinary) Non-required 0.6287 62.87%
Eye corrosion - 0.9930 99.30%
Eye irritation - 0.5819 58.19%
Skin irritation - 0.7548 75.48%
Skin corrosion - 0.9690 96.90%
Ames mutagenesis + 0.6400 64.00%
Human Ether-a-go-go-Related Gene inhibition - 0.6868 68.68%
Micronuclear - 0.5600 56.00%
Hepatotoxicity + 0.6151 61.51%
skin sensitisation - 0.5474 54.74%
Respiratory toxicity - 0.5000 50.00%
Reproductive toxicity + 0.7778 77.78%
Mitochondrial toxicity + 0.6625 66.25%
Nephrotoxicity + 0.6882 68.82%
Acute Oral Toxicity (c) III 0.6717 67.17%
Estrogen receptor binding + 0.7150 71.50%
Androgen receptor binding + 0.6482 64.82%
Thyroid receptor binding - 0.6217 62.17%
Glucocorticoid receptor binding + 0.7782 77.82%
Aromatase binding - 0.6027 60.27%
PPAR gamma + 0.7366 73.66%
Honey bee toxicity - 0.8905 89.05%
Biodegradation - 0.8500 85.00%
Crustacea aquatic toxicity - 0.6700 67.00%
Fish aquatic toxicity + 1.0000 100.00%

Targets

Top

Proven Targets:

CHEMBL ID UniProt ID Name Min activity Assay type Source
CHEMBL1781 P11387 DNA topoisomerase I 45000 nM
IC50
PMID: 7699697
CHEMBL2916 O14746 Telomerase reverse transcriptase 37300 nM
IC50
PMID: 11992780

Predicted Targets (via Super-PRED):

CHEMBL ID UniProt ID Name Probability Model accuracy
CHEMBL4203 Q9HAZ1 Dual specificity protein kinase CLK4 97.82% 94.45%
CHEMBL2581 P07339 Cathepsin D 97.19% 98.95%
CHEMBL5619 P27695 DNA-(apurinic or apyrimidinic site) lyase 96.05% 91.11%
CHEMBL3108638 O15164 Transcription intermediary factor 1-alpha 90.95% 95.56%
CHEMBL3401 O75469 Pregnane X receptor 87.54% 94.73%
CHEMBL1806 P11388 DNA topoisomerase II alpha 82.13% 89.00%
CHEMBL1860 P10827 Thyroid hormone receptor alpha 80.59% 99.15%

Plants that contains it

Top
Below are displayed all the plants proven (via scientific papers) to contain this compound!
To see more specific details click the taxa you are interested in.
Arnebia euchroma
Arnebia guttata
Echium italicum
Echium plantagineum
Eucalyptus coccifera
Lithospermum erythrorhizon
Onosma paniculata
Rhizomnium magnifolium
Strychnos usambarensis

Cross-Links

Top
PubChem 479501
NPASS NPC299405
ChEMBL CHEMBL403516
LOTUS LTS0106307
wikiData Q105309051