Pelargonidin

Details

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Internal ID f170c91e-5ee3-4de5-8f8b-fade2db80038
Taxonomy Phenylpropanoids and polyketides > Flavonoids > Hydroxyflavonoids > 7-hydroxyflavonoids
IUPAC Name 2-(4-hydroxyphenyl)chromenylium-3,5,7-triol
SMILES (Canonical) C1=CC(=CC=C1C2=[O+]C3=CC(=CC(=C3C=C2O)O)O)O
SMILES (Isomeric) C1=CC(=CC=C1C2=[O+]C3=CC(=CC(=C3C=C2O)O)O)O
InChI InChI=1S/C15H10O5/c16-9-3-1-8(2-4-9)15-13(19)7-11-12(18)5-10(17)6-14(11)20-15/h1-7H,(H3-,16,17,18,19)/p+1
InChI Key XVFMGWDSJLBXDZ-UHFFFAOYSA-O
Popularity 305 references in papers

Physical and Chemical Properties

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Molecular Formula C15H11O5+
Molecular Weight 271.24 g/mol
Exact Mass 271.06064845 g/mol
Topological Polar Surface Area (TPSA) 81.90 Ų
XlogP 0.00
Atomic LogP (AlogP) 3.20
H-Bond Acceptor 4
H-Bond Donor 4
Rotatable Bonds 1

Synonyms

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Pelargonidol
7690-51-9
CHEBI:25863
3,4',5,7-Tetrahydroxyflavylium
Pelargonidol chloride
3,5,7-trihydroxy-2-(4-hydroxyphenyl)-1-benzopyrylium
1-Benzopyrylium, 3,5,7-trihydroxy-2-(4-hydroxyphenyl)-
CHEMBL591036
SCHEMBL20592
CHEMBL1197905
There are more than 10 synonyms. If you wish to see them all click here.

2D Structure

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2D Structure of Pelargonidin

3D Structure

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ADMET Properties (via admetSAR 2)

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Target Value Probability (raw) Probability (%)
Human Intestinal Absorption + 0.7948 79.48%
Caco-2 - 0.7123 71.23%
Blood Brain Barrier - 0.7250 72.50%
Human oral bioavailability - 0.6571 65.71%
Subcellular localzation Nucleus 0.4941 49.41%
OATP2B1 inhibitior - 0.5236 52.36%
OATP1B1 inhibitior + 0.9122 91.22%
OATP1B3 inhibitior - 0.4199 41.99%
MATE1 inhibitior - 0.8200 82.00%
OCT2 inhibitior - 0.9250 92.50%
BSEP inhibitior - 0.4543 45.43%
P-glycoprotein inhibitior - 0.8278 82.78%
P-glycoprotein substrate - 0.9218 92.18%
CYP3A4 substrate - 0.5930 59.30%
CYP2C9 substrate - 1.0000 100.00%
CYP2D6 substrate - 0.7212 72.12%
CYP3A4 inhibition - 0.5125 51.25%
CYP2C9 inhibition + 0.8393 83.93%
CYP2C19 inhibition + 0.6630 66.30%
CYP2D6 inhibition - 0.8624 86.24%
CYP1A2 inhibition + 0.8097 80.97%
CYP2C8 inhibition + 0.7648 76.48%
CYP inhibitory promiscuity + 0.7642 76.42%
UGT catelyzed + 0.7000 70.00%
Carcinogenicity (binary) - 0.9800 98.00%
Carcinogenicity (trinary) Non-required 0.6382 63.82%
Eye corrosion - 0.9870 98.70%
Eye irritation + 0.9762 97.62%
Skin irritation + 0.5492 54.92%
Skin corrosion - 0.9252 92.52%
Ames mutagenesis - 0.6900 69.00%
Human Ether-a-go-go-Related Gene inhibition - 0.8637 86.37%
Micronuclear + 0.8600 86.00%
Hepatotoxicity - 0.6125 61.25%
skin sensitisation - 0.7918 79.18%
Respiratory toxicity + 0.5333 53.33%
Reproductive toxicity + 0.7000 70.00%
Mitochondrial toxicity + 0.5750 57.50%
Nephrotoxicity - 0.5959 59.59%
Acute Oral Toxicity (c) II 0.5407 54.07%
Estrogen receptor binding + 0.9594 95.94%
Androgen receptor binding + 0.8991 89.91%
Thyroid receptor binding + 0.7891 78.91%
Glucocorticoid receptor binding + 0.9411 94.11%
Aromatase binding + 0.9632 96.32%
PPAR gamma + 0.9527 95.27%
Honey bee toxicity - 0.9057 90.57%
Biodegradation - 0.9000 90.00%
Crustacea aquatic toxicity + 0.6400 64.00%
Fish aquatic toxicity + 0.8630 86.30%

Targets

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Proven Targets:

CHEMBL ID UniProt ID Name Min activity Assay type Source
CHEMBL4660 P28907 Lymphocyte differentiation antigen CD38 16300 nM
IC50
PMID: 21641214

Predicted Targets (via Super-PRED):

CHEMBL ID UniProt ID Name Probability Model accuracy
CHEMBL242 Q92731 Estrogen receptor beta 97.77% 98.35%
CHEMBL1929 P47989 Xanthine dehydrogenase 97.67% 96.12%
CHEMBL5619 P27695 DNA-(apurinic or apyrimidinic site) lyase 95.52% 91.11%
CHEMBL1951 P21397 Monoamine oxidase A 92.01% 91.49%
CHEMBL1860 P10827 Thyroid hormone receptor alpha 91.18% 99.15%
CHEMBL2581 P07339 Cathepsin D 88.71% 98.95%
CHEMBL215 P09917 Arachidonate 5-lipoxygenase 85.91% 92.68%
CHEMBL1907594 P30926 Neuronal acetylcholine receptor; alpha3/beta4 84.85% 97.23%
CHEMBL1806 P11388 DNA topoisomerase II alpha 84.66% 89.00%
CHEMBL2635 P51452 Dual specificity protein phosphatase 3 83.97% 94.00%
CHEMBL3438 Q05513 Protein kinase C zeta 83.36% 88.48%
CHEMBL5697 Q9GZT9 Egl nine homolog 1 82.67% 93.40%
CHEMBL2288 Q13526 Peptidyl-prolyl cis-trans isomerase NIMA-interacting 1 81.51% 91.71%
CHEMBL3194 P02766 Transthyretin 80.81% 90.71%

Plants that contains it

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Cross-Links

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PubChem 440832
NPASS NPC190454
ChEMBL CHEMBL1197905
LOTUS LTS0269823
wikiData Q2522451