Nudiposide

Details

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Internal ID 89d80ecf-aaa6-4058-8f93-a7c698cde03d
Taxonomy Lignans, neolignans and related compounds > Lignan glycosides
IUPAC Name (2R,3R,4S,5R)-2-[[(1R,2S,3S)-7-hydroxy-1-(4-hydroxy-3,5-dimethoxyphenyl)-3-(hydroxymethyl)-6,8-dimethoxy-1,2,3,4-tetrahydronaphthalen-2-yl]methoxy]oxane-3,4,5-triol
SMILES (Canonical) COC1=CC(=CC(=C1O)OC)C2C(C(CC3=CC(=C(C(=C23)OC)O)OC)CO)COC4C(C(C(CO4)O)O)O
SMILES (Isomeric) COC1=CC(=CC(=C1O)OC)[C@H]2[C@@H]([C@H](CC3=CC(=C(C(=C23)OC)O)OC)CO)CO[C@H]4[C@@H]([C@H]([C@@H](CO4)O)O)O
InChI InChI=1S/C27H36O12/c1-34-17-7-13(8-18(35-2)23(17)31)20-15(10-38-27-25(33)22(30)16(29)11-39-27)14(9-28)5-12-6-19(36-3)24(32)26(37-4)21(12)20/h6-8,14-16,20,22,25,27-33H,5,9-11H2,1-4H3/t14-,15-,16-,20+,22+,25-,27-/m1/s1
InChI Key GWDZRGQRNHELQM-NHJKQUFYSA-N
Popularity 2 references in papers

Physical and Chemical Properties

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Molecular Formula C27H36O12
Molecular Weight 552.60 g/mol
Exact Mass 552.22067658 g/mol
Topological Polar Surface Area (TPSA) 177.00 Ų
XlogP 0.50
Atomic LogP (AlogP) 0.50
H-Bond Acceptor 12
H-Bond Donor 6
Rotatable Bonds 9

Synonyms

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62058-46-2
(2R,3R,4S,5R)-2-[[(1R,2S,3S)-7-hydroxy-1-(4-hydroxy-3,5-dimethoxyphenyl)-3-(hydroxymethyl)-6,8-dimethoxy-1,2,3,4-tetrahydronaphthalen-2-yl]methoxy]oxane-3,4,5-triol
[(1R)-1,2,3,4-Tetrahydro-7-hydroxy-1beta-(4-hydroxy-3,5-dimethoxyphenyl)-3beta-hydroxymethyl-6,8-dimethoxynaphthalen-2alpha-yl]methyl beta-D-xylopyranoside
CHEMBL466738
DTXSID201318474
BDBM50378459
AKOS040762129

2D Structure

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2D Structure of Nudiposide

3D Structure

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ADMET Properties (via admetSAR 2)

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Target Value Probability (raw) Probability (%)
Human Intestinal Absorption + 0.5620 56.20%
Caco-2 - 0.8042 80.42%
Blood Brain Barrier - 0.6500 65.00%
Human oral bioavailability - 0.6286 62.86%
Subcellular localzation Mitochondria 0.5778 57.78%
OATP2B1 inhibitior - 1.0000 100.00%
OATP1B1 inhibitior + 0.8456 84.56%
OATP1B3 inhibitior + 0.9564 95.64%
MATE1 inhibitior - 0.9600 96.00%
OCT2 inhibitior - 0.7750 77.50%
BSEP inhibitior + 0.6406 64.06%
P-glycoprotein inhibitior - 0.5356 53.56%
P-glycoprotein substrate - 0.5069 50.69%
CYP3A4 substrate + 0.6241 62.41%
CYP2C9 substrate - 0.8002 80.02%
CYP2D6 substrate - 0.7492 74.92%
CYP3A4 inhibition - 0.9278 92.78%
CYP2C9 inhibition - 0.9314 93.14%
CYP2C19 inhibition - 0.8547 85.47%
CYP2D6 inhibition - 0.9078 90.78%
CYP1A2 inhibition - 0.8014 80.14%
CYP2C8 inhibition + 0.5778 57.78%
CYP inhibitory promiscuity - 0.8509 85.09%
UGT catelyzed + 0.6000 60.00%
Carcinogenicity (binary) - 0.9700 97.00%
Carcinogenicity (trinary) Non-required 0.6996 69.96%
Eye corrosion - 0.9910 99.10%
Eye irritation - 0.9273 92.73%
Skin irritation - 0.8432 84.32%
Skin corrosion - 0.9603 96.03%
Ames mutagenesis - 0.5486 54.86%
Human Ether-a-go-go-Related Gene inhibition + 0.6641 66.41%
Micronuclear + 0.5500 55.00%
Hepatotoxicity - 0.7320 73.20%
skin sensitisation - 0.9170 91.70%
Respiratory toxicity + 0.6000 60.00%
Reproductive toxicity + 0.7889 78.89%
Mitochondrial toxicity + 0.5875 58.75%
Nephrotoxicity - 0.9602 96.02%
Acute Oral Toxicity (c) III 0.6502 65.02%
Estrogen receptor binding + 0.8419 84.19%
Androgen receptor binding + 0.6875 68.75%
Thyroid receptor binding + 0.6099 60.99%
Glucocorticoid receptor binding + 0.6863 68.63%
Aromatase binding + 0.6042 60.42%
PPAR gamma + 0.5996 59.96%
Honey bee toxicity - 0.8018 80.18%
Biodegradation - 0.8250 82.50%
Crustacea aquatic toxicity - 0.7500 75.00%
Fish aquatic toxicity + 0.8571 85.71%

Targets

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Proven Targets:

CHEMBL ID UniProt ID Name Min activity Assay type Source
No proven targets yet!

Predicted Targets (via Super-PRED):

CHEMBL ID UniProt ID Name Probability Model accuracy
CHEMBL5619 P27695 DNA-(apurinic or apyrimidinic site) lyase 99.60% 91.11%
CHEMBL3251 P19838 Nuclear factor NF-kappa-B p105 subunit 98.38% 96.09%
CHEMBL4261 Q16665 Hypoxia-inducible factor 1 alpha 95.89% 85.14%
CHEMBL3137262 O60341 LSD1/CoREST complex 91.97% 97.09%
CHEMBL241 Q14432 Phosphodiesterase 3A 91.60% 92.94%
CHEMBL225 P28335 Serotonin 2c (5-HT2c) receptor 90.94% 89.62%
CHEMBL2581 P07339 Cathepsin D 88.49% 98.95%
CHEMBL2373 P21730 C5a anaphylatoxin chemotactic receptor 87.76% 92.62%
CHEMBL1907603 Q05586 Glutamate NMDA receptor; GRIN1/GRIN2B 86.93% 95.89%
CHEMBL2635 P51452 Dual specificity protein phosphatase 3 86.81% 94.00%
CHEMBL3060 Q9Y345 Glycine transporter 2 86.57% 99.17%
CHEMBL1806 P11388 DNA topoisomerase II alpha 84.76% 89.00%
CHEMBL1293249 Q13887 Kruppel-like factor 5 84.44% 86.33%
CHEMBL1075094 Q16236 Nuclear factor erythroid 2-related factor 2 84.28% 96.00%
CHEMBL4306 P22460 Voltage-gated potassium channel subunit Kv1.5 81.72% 94.03%
CHEMBL5608 Q16288 NT-3 growth factor receptor 80.72% 95.89%
CHEMBL2535 P11166 Glucose transporter 80.32% 98.75%

Plants that contains it

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Below are displayed all the plants proven (via scientific papers) to contain this compound!
To see more specific details click the taxa you are interested in.
Betula dahurica
Betula ermanii
Betula pendula
Betula pendula subsp. mandshurica
Combretum quadrangulare
Enkianthus nudipes
Epimedium diphyllum
Litsea glutinosa
Machilus thunbergii
Neoalsomitra clavigera
Saraca asoca
Scutia myrtina
Ulmus davidiana
Viburnum dilatatum

Cross-Links

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PubChem 14521040
NPASS NPC182368
ChEMBL CHEMBL466738
LOTUS LTS0009029
wikiData Q104936944