Isocitric acid

Details

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Internal ID 4d86f432-28c8-4eb9-a2ef-7be4162ba75d
Taxonomy Organic acids and derivatives > Carboxylic acids and derivatives > Tricarboxylic acids and derivatives
IUPAC Name 1-hydroxypropane-1,2,3-tricarboxylic acid
SMILES (Canonical) C(C(C(C(=O)O)O)C(=O)O)C(=O)O
SMILES (Isomeric) C(C(C(C(=O)O)O)C(=O)O)C(=O)O
InChI InChI=1S/C6H8O7/c7-3(8)1-2(5(10)11)4(9)6(12)13/h2,4,9H,1H2,(H,7,8)(H,10,11)(H,12,13)
InChI Key ODBLHEXUDAPZAU-UHFFFAOYSA-N
Popularity 3,342 references in papers

Physical and Chemical Properties

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Molecular Formula C6H8O7
Molecular Weight 192.12 g/mol
Exact Mass 192.02700259 g/mol
Topological Polar Surface Area (TPSA) 132.00 Ų
XlogP -1.80
Atomic LogP (AlogP) -1.39
H-Bond Acceptor 4
H-Bond Donor 4
Rotatable Bonds 5

Synonyms

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isocitrate
320-77-4
1-Hydroxypropane-1,2,3-tricarboxylic acid
I-CIT
3-Carboxy-2,3-dideoxy-1-hydroxypropan-1,2,3-tricarboxylic acid
3-carboxy-2,3-dideoxypentaric acid
DL-Isocitric acid
1-Hydroxytricarballylic acid
9RW6G5D4MQ
1-Hydroxy-1,2,3-propanetricarboxylic acid
There are more than 10 synonyms. If you wish to see them all click here.

2D Structure

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2D Structure of Isocitric acid

3D Structure

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ADMET Properties (via admetSAR 2)

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Target Value Probability (raw) Probability (%)
Human Intestinal Absorption - 0.7424 74.24%
Caco-2 - 0.9846 98.46%
Blood Brain Barrier - 0.5750 57.50%
Human oral bioavailability + 0.6000 60.00%
Subcellular localzation Mitochondria 0.6836 68.36%
OATP2B1 inhibitior - 0.8523 85.23%
OATP1B1 inhibitior + 0.9576 95.76%
OATP1B3 inhibitior + 0.9515 95.15%
MATE1 inhibitior - 1.0000 100.00%
OCT2 inhibitior - 1.0000 100.00%
BSEP inhibitior - 0.9902 99.02%
P-glycoprotein inhibitior - 0.9855 98.55%
P-glycoprotein substrate - 0.9872 98.72%
CYP3A4 substrate - 0.7419 74.19%
CYP2C9 substrate + 0.6015 60.15%
CYP2D6 substrate - 0.8368 83.68%
CYP3A4 inhibition - 0.8948 89.48%
CYP2C9 inhibition - 0.9610 96.10%
CYP2C19 inhibition - 0.9639 96.39%
CYP2D6 inhibition - 0.9488 94.88%
CYP1A2 inhibition - 0.9467 94.67%
CYP2C8 inhibition - 0.9865 98.65%
CYP inhibitory promiscuity - 0.9910 99.10%
UGT catelyzed + 0.9000 90.00%
Carcinogenicity (binary) - 0.8230 82.30%
Carcinogenicity (trinary) Non-required 0.7434 74.34%
Eye corrosion - 0.8721 87.21%
Eye irritation + 0.8123 81.23%
Skin irritation + 0.5094 50.94%
Skin corrosion - 0.8592 85.92%
Ames mutagenesis - 0.5700 57.00%
Human Ether-a-go-go-Related Gene inhibition - 0.8032 80.32%
Micronuclear - 0.5000 50.00%
Hepatotoxicity + 0.6425 64.25%
skin sensitisation - 0.9352 93.52%
Respiratory toxicity - 0.8889 88.89%
Reproductive toxicity - 0.8667 86.67%
Mitochondrial toxicity - 0.7125 71.25%
Nephrotoxicity - 0.6619 66.19%
Acute Oral Toxicity (c) III 0.7630 76.30%
Estrogen receptor binding - 0.8677 86.77%
Androgen receptor binding - 0.7432 74.32%
Thyroid receptor binding - 0.8538 85.38%
Glucocorticoid receptor binding - 0.6046 60.46%
Aromatase binding - 0.8577 85.77%
PPAR gamma - 0.8323 83.23%
Honey bee toxicity - 0.9154 91.54%
Biodegradation + 0.6500 65.00%
Crustacea aquatic toxicity - 0.9400 94.00%
Fish aquatic toxicity - 0.7744 77.44%

Targets

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Proven Targets:

CHEMBL ID UniProt ID Name Min activity Assay type Source
No proven targets yet!

Predicted Targets (via Super-PRED):

CHEMBL ID UniProt ID Name Probability Model accuracy
CHEMBL4040 P28482 MAP kinase ERK2 92.76% 83.82%
CHEMBL3251 P19838 Nuclear factor NF-kappa-B p105 subunit 88.34% 96.09%
CHEMBL2581 P07339 Cathepsin D 87.85% 98.95%
CHEMBL221 P23219 Cyclooxygenase-1 86.03% 90.17%
CHEMBL3060 Q9Y345 Glycine transporter 2 82.35% 99.17%

Plants that contains it

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Below are displayed all the plants proven (via scientific papers) to contain this compound!
To see more specific details click the taxa you are interested in.
Arabidopsis thaliana
Cannabis sativa
Couroupita guianensis
Digitalis purpurea
Eleusine coracana
Hyacinthoides non-scripta
Kalanchoe fedtschenkoi
Medicago sativa
Populus tremula
Solanum lycopersicum
Vaccinium macrocarpon

Cross-Links

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PubChem 1198
LOTUS LTS0064544
wikiData Q288927