Hydnocarpin D

Details

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Internal ID ff9f53c7-695d-4b65-9c43-03b4d9f765da
Taxonomy Lignans, neolignans and related compounds > Flavonolignans
IUPAC Name 5,7-dihydroxy-2-[(2R,3R)-3-(4-hydroxy-3-methoxyphenyl)-2-(hydroxymethyl)-2,3-dihydro-1,4-benzodioxin-6-yl]chromen-4-one
SMILES (Canonical) COC1=C(C=CC(=C1)C2C(OC3=C(O2)C=C(C=C3)C4=CC(=O)C5=C(C=C(C=C5O4)O)O)CO)O
SMILES (Isomeric) COC1=C(C=CC(=C1)[C@@H]2[C@H](OC3=C(O2)C=C(C=C3)C4=CC(=O)C5=C(C=C(C=C5O4)O)O)CO)O
InChI InChI=1S/C25H20O9/c1-31-20-7-13(2-4-15(20)28)25-23(11-26)32-18-5-3-12(6-21(18)34-25)19-10-17(30)24-16(29)8-14(27)9-22(24)33-19/h2-10,23,25-29H,11H2,1H3/t23-,25-/m1/s1
InChI Key ZYWKQKQEAVWKHD-ILBGXUMGSA-N
Popularity 5 references in papers

Physical and Chemical Properties

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Molecular Formula C25H20O9
Molecular Weight 464.40 g/mol
Exact Mass 464.11073221 g/mol
Topological Polar Surface Area (TPSA) 135.00 Ų
XlogP 3.30
Atomic LogP (AlogP) 3.46
H-Bond Acceptor 9
H-Bond Donor 4
Rotatable Bonds 4

Synonyms

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CHEMBL89401

2D Structure

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2D Structure of Hydnocarpin D

3D Structure

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ADMET Properties (via admetSAR 2)

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Target Value Probability (raw) Probability (%)
Human Intestinal Absorption + 0.9045 90.45%
Caco-2 - 0.8014 80.14%
Blood Brain Barrier - 0.8000 80.00%
Human oral bioavailability - 0.6571 65.71%
Subcellular localzation Mitochondria 0.6746 67.46%
OATP2B1 inhibitior - 0.5631 56.31%
OATP1B1 inhibitior + 0.8930 89.30%
OATP1B3 inhibitior + 0.8605 86.05%
MATE1 inhibitior - 0.6200 62.00%
OCT2 inhibitior - 0.8750 87.50%
BSEP inhibitior + 0.9156 91.56%
P-glycoprotein inhibitior + 0.9594 95.94%
P-glycoprotein substrate - 0.7081 70.81%
CYP3A4 substrate + 0.6212 62.12%
CYP2C9 substrate - 0.6235 62.35%
CYP2D6 substrate - 0.8293 82.93%
CYP3A4 inhibition + 0.5057 50.57%
CYP2C9 inhibition + 0.6354 63.54%
CYP2C19 inhibition - 0.5992 59.92%
CYP2D6 inhibition - 0.9231 92.31%
CYP1A2 inhibition - 0.7709 77.09%
CYP2C8 inhibition + 0.8028 80.28%
CYP inhibitory promiscuity + 0.7391 73.91%
UGT catelyzed + 0.9000 90.00%
Carcinogenicity (binary) - 0.9900 99.00%
Carcinogenicity (trinary) Non-required 0.7023 70.23%
Eye corrosion - 0.9843 98.43%
Eye irritation - 0.8240 82.40%
Skin irritation - 0.7892 78.92%
Skin corrosion - 0.9591 95.91%
Ames mutagenesis - 0.6292 62.92%
Human Ether-a-go-go-Related Gene inhibition - 0.4896 48.96%
Micronuclear + 0.6759 67.59%
Hepatotoxicity + 0.5125 51.25%
skin sensitisation - 0.8875 88.75%
Respiratory toxicity + 0.5556 55.56%
Reproductive toxicity + 0.7556 75.56%
Mitochondrial toxicity - 0.5250 52.50%
Nephrotoxicity - 0.6421 64.21%
Acute Oral Toxicity (c) III 0.7236 72.36%
Estrogen receptor binding + 0.8391 83.91%
Androgen receptor binding + 0.8629 86.29%
Thyroid receptor binding + 0.6231 62.31%
Glucocorticoid receptor binding + 0.8385 83.85%
Aromatase binding - 0.5209 52.09%
PPAR gamma + 0.7600 76.00%
Honey bee toxicity - 0.7129 71.29%
Biodegradation - 0.9250 92.50%
Crustacea aquatic toxicity - 0.7100 71.00%
Fish aquatic toxicity - 0.5170 51.70%

Targets

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Proven Targets:

CHEMBL ID UniProt ID Name Min activity Assay type Source
No proven targets yet!

Predicted Targets (via Super-PRED):

CHEMBL ID UniProt ID Name Probability Model accuracy
CHEMBL5619 P27695 DNA-(apurinic or apyrimidinic site) lyase 99.31% 91.11%
CHEMBL4261 Q16665 Hypoxia-inducible factor 1 alpha 98.39% 85.14%
CHEMBL2635 P51452 Dual specificity protein phosphatase 3 95.28% 94.00%
CHEMBL2581 P07339 Cathepsin D 94.78% 98.95%
CHEMBL1806 P11388 DNA topoisomerase II alpha 94.59% 89.00%
CHEMBL3251 P19838 Nuclear factor NF-kappa-B p105 subunit 93.96% 96.09%
CHEMBL3108638 O15164 Transcription intermediary factor 1-alpha 93.60% 95.56%
CHEMBL4016 P42262 Glutamate receptor ionotropic, AMPA 2 93.26% 86.92%
CHEMBL3194 P02766 Transthyretin 92.62% 90.71%
CHEMBL1293249 Q13887 Kruppel-like factor 5 91.55% 86.33%
CHEMBL1860 P10827 Thyroid hormone receptor alpha 91.11% 99.15%
CHEMBL4203 Q9HAZ1 Dual specificity protein kinase CLK4 90.52% 94.45%
CHEMBL3137262 O60341 LSD1/CoREST complex 88.61% 97.09%
CHEMBL3060 Q9Y345 Glycine transporter 2 84.99% 99.17%
CHEMBL4478 Q00975 Voltage-gated N-type calcium channel alpha-1B subunit 84.42% 97.14%
CHEMBL3038477 P67870 Casein kinase II alpha/beta 83.48% 99.23%
CHEMBL5339 Q5NUL3 G-protein coupled receptor 120 83.25% 95.78%
CHEMBL1907 P15144 Aminopeptidase N 82.95% 93.31%
CHEMBL3091268 Q92753 Nuclear receptor ROR-beta 82.27% 95.50%
CHEMBL2146302 O94925 Glutaminase kidney isoform, mitochondrial 81.91% 100.00%

Cross-Links

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PubChem 11431204
NPASS NPC113163
LOTUS LTS0041686
wikiData Q105386486