Geranic acid

Details

Top
Internal ID 0497e59f-4cb8-4c55-a481-20fc9381b94f
Taxonomy Lipids and lipid-like molecules > Prenol lipids > Monoterpenoids > Acyclic monoterpenoids
IUPAC Name (2E)-3,7-dimethylocta-2,6-dienoic acid
SMILES (Canonical) CC(=CCCC(=CC(=O)O)C)C
SMILES (Isomeric) CC(=CCC/C(=C/C(=O)O)/C)C
InChI InChI=1S/C10H16O2/c1-8(2)5-4-6-9(3)7-10(11)12/h5,7H,4,6H2,1-3H3,(H,11,12)/b9-7+
InChI Key ZHYZQXUYZJNEHD-VQHVLOKHSA-N
Popularity 254 references in papers

Physical and Chemical Properties

Top
Molecular Formula C10H16O2
Molecular Weight 168.23 g/mol
Exact Mass 168.115029749 g/mol
Topological Polar Surface Area (TPSA) 37.30 Ų
XlogP 3.10
Atomic LogP (AlogP) 2.76
H-Bond Acceptor 1
H-Bond Donor 1
Rotatable Bonds 4

Synonyms

Top
459-80-3
3,7-Dimethylocta-2,6-dienoic acid
(2E)-3,7-dimethylocta-2,6-dienoic acid
4698-08-2
Decaprenoic acid
2,6-Octadienoic acid, 3,7-dimethyl-
trans-geranic acid
(E)-3,7-dimethylocta-2,6-dienoic acid
3,7-Dimethyl-2,6-octadienoic acid
Geranic acid a
There are more than 10 synonyms. If you wish to see them all click here.

2D Structure

Top
2D Structure of Geranic acid

3D Structure

Top

ADMET Properties (via admetSAR 2)

Top
Target Value Probability (raw) Probability (%)
Human Intestinal Absorption + 0.9871 98.71%
Caco-2 + 0.9228 92.28%
Blood Brain Barrier + 0.9250 92.50%
Human oral bioavailability - 0.6429 64.29%
Subcellular localzation Mitochondria 0.3870 38.70%
OATP2B1 inhibitior - 0.8496 84.96%
OATP1B1 inhibitior + 0.9190 91.90%
OATP1B3 inhibitior + 0.8509 85.09%
MATE1 inhibitior - 0.9000 90.00%
OCT2 inhibitior - 0.8000 80.00%
BSEP inhibitior - 0.9169 91.69%
P-glycoprotein inhibitior - 0.9858 98.58%
P-glycoprotein substrate - 0.9765 97.65%
CYP3A4 substrate - 0.6640 66.40%
CYP2C9 substrate + 0.6145 61.45%
CYP2D6 substrate - 0.9169 91.69%
CYP3A4 inhibition - 0.9690 96.90%
CYP2C9 inhibition - 0.8832 88.32%
CYP2C19 inhibition - 0.9162 91.62%
CYP2D6 inhibition - 0.9370 93.70%
CYP1A2 inhibition - 0.8498 84.98%
CYP2C8 inhibition - 0.9835 98.35%
CYP inhibitory promiscuity - 0.8641 86.41%
UGT catelyzed - 0.0000 0.00%
Carcinogenicity (binary) - 0.5615 56.15%
Carcinogenicity (trinary) Non-required 0.6650 66.50%
Eye corrosion + 0.7407 74.07%
Eye irritation + 0.9302 93.02%
Skin irritation + 0.8705 87.05%
Skin corrosion + 0.5188 51.88%
Ames mutagenesis - 0.8500 85.00%
Human Ether-a-go-go-Related Gene inhibition - 0.6122 61.22%
Micronuclear - 1.0000 100.00%
Hepatotoxicity - 0.5375 53.75%
skin sensitisation + 0.8188 81.88%
Respiratory toxicity - 0.8556 85.56%
Reproductive toxicity - 0.7979 79.79%
Mitochondrial toxicity - 0.6500 65.00%
Nephrotoxicity + 0.5986 59.86%
Acute Oral Toxicity (c) III 0.8193 81.93%
Estrogen receptor binding - 0.9786 97.86%
Androgen receptor binding - 0.7806 78.06%
Thyroid receptor binding - 0.9221 92.21%
Glucocorticoid receptor binding - 0.8401 84.01%
Aromatase binding - 0.9100 91.00%
PPAR gamma - 0.7702 77.02%
Honey bee toxicity - 0.9245 92.45%
Biodegradation + 0.5750 57.50%
Crustacea aquatic toxicity - 0.7600 76.00%
Fish aquatic toxicity + 0.9345 93.45%

Targets

Top

Proven Targets:

CHEMBL ID UniProt ID Name Min activity Assay type Source
CHEMBL1293226 B2RXH2 Lysine-specific demethylase 4D-like 28183.8 nM
Potency
via CMAUP
CHEMBL3797 Q13315 Serine-protein kinase ATM 39810.7 nM
Potency
via CMAUP

Predicted Targets (via Super-PRED):

CHEMBL ID UniProt ID Name Probability Model accuracy
CHEMBL3060 Q9Y345 Glycine transporter 2 85.66% 99.17%
CHEMBL3251 P19838 Nuclear factor NF-kappa-B p105 subunit 85.49% 96.09%
CHEMBL2581 P07339 Cathepsin D 84.09% 98.95%
CHEMBL4769 O95749 Geranylgeranyl pyrophosphate synthetase 84.02% 92.08%
CHEMBL221 P23219 Cyclooxygenase-1 83.83% 90.17%

Cross-Links

Top
PubChem 5275520
NPASS NPC304079
ChEMBL CHEMBL170190
LOTUS LTS0226491
wikiData Q4381113