Isodomoic acid B

Details

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Internal ID 2e1f4608-f898-49df-81c6-332d1f663134
Taxonomy Organic acids and derivatives > Carboxylic acids and derivatives > Amino acids, peptides, and analogues > Amino acids and derivatives > Kainoids
IUPAC Name (2S,3S,4S)-4-[(2E,5E)-6-carboxyhepta-2,5-dien-2-yl]-3-(carboxymethyl)pyrrolidine-2-carboxylic acid
SMILES (Canonical) CC(=CCC=C(C)C(=O)O)C1CNC(C1CC(=O)O)C(=O)O
SMILES (Isomeric) C/C(=C\C/C=C(\C)/C(=O)O)/[C@H]1CN[C@@H]([C@H]1CC(=O)O)C(=O)O
InChI InChI=1S/C15H21NO6/c1-8(4-3-5-9(2)14(19)20)11-7-16-13(15(21)22)10(11)6-12(17)18/h4-5,10-11,13,16H,3,6-7H2,1-2H3,(H,17,18)(H,19,20)(H,21,22)/b8-4+,9-5+/t10-,11+,13-/m0/s1
InChI Key DDAJBUQQWFXHDM-HKHGPXCKSA-N
Popularity 2 references in papers

Physical and Chemical Properties

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Molecular Formula C15H21NO6
Molecular Weight 311.33 g/mol
Exact Mass 311.13688739 g/mol
Topological Polar Surface Area (TPSA) 124.00 Ų
XlogP -1.30
Atomic LogP (AlogP) 1.12
H-Bond Acceptor 4
H-Bond Donor 4
Rotatable Bonds 7

Synonyms

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(-)-Isodomoic acid B
101977-25-7
(2S,3S,4S)-4-[(2E,5E)-6-carboxyhepta-2,5-dien-2-yl]-3-(carboxymethyl)pyrrolidine-2-carboxylic acid
InChI=1/C15H21NO6/c1-8(4-3-5-9(2)14(19)20)11-7-16-13(15(21)22)10(11)6-12(17)18/h4-5,10-11,13,16H,3,6-7H2,1-2H3,(H,17,18)(H,19,20)(H,21,22)/b8-4+,9-5+/t10-,11+,13-/m0/s

2D Structure

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2D Structure of Isodomoic acid B

3D Structure

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ADMET Properties (via admetSAR 2)

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Target Value Probability (raw) Probability (%)
Human Intestinal Absorption + 0.9086 90.86%
Caco-2 - 0.6567 65.67%
Blood Brain Barrier - 0.5500 55.00%
Human oral bioavailability - 0.5000 50.00%
Subcellular localzation Mitochondria 0.7092 70.92%
OATP2B1 inhibitior - 0.8574 85.74%
OATP1B1 inhibitior + 0.8870 88.70%
OATP1B3 inhibitior + 0.9423 94.23%
MATE1 inhibitior - 0.9200 92.00%
OCT2 inhibitior - 0.9500 95.00%
BSEP inhibitior - 0.6984 69.84%
P-glycoprotein inhibitior - 0.9289 92.89%
P-glycoprotein substrate - 0.8369 83.69%
CYP3A4 substrate - 0.5339 53.39%
CYP2C9 substrate + 0.6277 62.77%
CYP2D6 substrate - 0.8612 86.12%
CYP3A4 inhibition - 0.9855 98.55%
CYP2C9 inhibition - 0.9130 91.30%
CYP2C19 inhibition - 0.9180 91.80%
CYP2D6 inhibition - 0.9230 92.30%
CYP1A2 inhibition - 0.9045 90.45%
CYP2C8 inhibition - 0.8535 85.35%
CYP inhibitory promiscuity - 0.9836 98.36%
UGT catelyzed - 0.0000 0.00%
Carcinogenicity (binary) - 0.9000 90.00%
Carcinogenicity (trinary) Non-required 0.6527 65.27%
Eye corrosion - 0.9793 97.93%
Eye irritation - 0.9504 95.04%
Skin irritation - 0.7646 76.46%
Skin corrosion - 0.9238 92.38%
Ames mutagenesis - 0.6500 65.00%
Human Ether-a-go-go-Related Gene inhibition - 0.5515 55.15%
Micronuclear - 0.5300 53.00%
Hepatotoxicity + 0.6500 65.00%
skin sensitisation - 0.8557 85.57%
Respiratory toxicity + 0.5556 55.56%
Reproductive toxicity + 0.5188 51.88%
Mitochondrial toxicity + 0.6125 61.25%
Nephrotoxicity - 0.9074 90.74%
Acute Oral Toxicity (c) III 0.6011 60.11%
Estrogen receptor binding - 0.5780 57.80%
Androgen receptor binding - 0.6853 68.53%
Thyroid receptor binding - 0.6460 64.60%
Glucocorticoid receptor binding + 0.5617 56.17%
Aromatase binding - 0.6513 65.13%
PPAR gamma - 0.6032 60.32%
Honey bee toxicity - 0.9411 94.11%
Biodegradation - 0.6250 62.50%
Crustacea aquatic toxicity - 0.7200 72.00%
Fish aquatic toxicity + 0.8982 89.82%

Targets

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Proven Targets:

CHEMBL ID UniProt ID Name Min activity Assay type Source
No proven targets yet!

Predicted Targets (via Super-PRED):

CHEMBL ID UniProt ID Name Probability Model accuracy
CHEMBL3251 P19838 Nuclear factor NF-kappa-B p105 subunit 94.11% 96.09%
CHEMBL2581 P07339 Cathepsin D 90.29% 98.95%
CHEMBL4203 Q9HAZ1 Dual specificity protein kinase CLK4 87.19% 94.45%
CHEMBL5619 P27695 DNA-(apurinic or apyrimidinic site) lyase 85.18% 91.11%
CHEMBL3137262 O60341 LSD1/CoREST complex 84.30% 97.09%
CHEMBL253 P34972 Cannabinoid CB2 receptor 82.86% 97.25%
CHEMBL3807 P17706 T-cell protein-tyrosine phosphatase 81.96% 93.00%
CHEMBL3108638 O15164 Transcription intermediary factor 1-alpha 81.07% 95.56%
CHEMBL218 P21554 Cannabinoid CB1 receptor 80.22% 96.61%

Plants that contains it

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Below are displayed all the plants proven (via scientific papers) to contain this compound!
To see more specific details click the taxa you are interested in.
Anacyclus monanthos
Arum palaestinum
Astragalus siculus
Caulophyllum robustum
Corydalis balansae
Euphorbia cuneata
Guizotia scabra
Hakea trifurcata
Mikania cordifolia
Prunus speciosa
Raoulia australis
Senecio chionophilus
Terminalia brachystemma
Ulmus glabra

Cross-Links

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PubChem 6442550
NPASS NPC219133
LOTUS LTS0067650
wikiData Q104976177