Germacrene D-4-ol

Details

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Internal ID ee8a7e59-33d4-4090-b914-4af94aa577b5
Taxonomy Lipids and lipid-like molecules > Prenol lipids > Sesquiterpenoids > Germacrane sesquiterpenoids
IUPAC Name (2E,7E)-1,7-dimethyl-4-propan-2-ylcyclodeca-2,7-dien-1-ol
SMILES (Canonical) CC1=CCCC(C=CC(CC1)C(C)C)(C)O
SMILES (Isomeric) C/C/1=C\CCC(/C=C/C(CC1)C(C)C)(C)O
InChI InChI=1S/C15H26O/c1-12(2)14-8-7-13(3)6-5-10-15(4,16)11-9-14/h6,9,11-12,14,16H,5,7-8,10H2,1-4H3/b11-9+,13-6+
InChI Key RHCTXHCNRLCYBN-BMCYRRRCSA-N
Popularity 1 reference in papers

Physical and Chemical Properties

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Molecular Formula C15H26O
Molecular Weight 222.37 g/mol
Exact Mass 222.198365449 g/mol
Topological Polar Surface Area (TPSA) 20.20 Ų
XlogP 3.80
Atomic LogP (AlogP) 4.09
H-Bond Acceptor 1
H-Bond Donor 1
Rotatable Bonds 1

Synonyms

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Germacren D-4-ol
Germacra-1(10),5-dien-4-ol
germacrene-D-4-ol
CHEBI:141218
RHCTXHCNRLCYBN-BMCYRRRCSA-N
RHCTXHCNRLCYBN-XEUZVJIISA-N
(2E,7E)-1,7-dimethyl-4-propan-2-ylcyclodeca-2,7-dien-1-ol
Hydroxy-1,7-dimethyl-4-isopropyl-2,7-cyclodecadiene
Q67879906
(2E,4S,7E)-4-Isopropyl-1,7-dimethylcyclodeca-2,7-dienol
There are more than 10 synonyms. If you wish to see them all click here.

2D Structure

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2D Structure of Germacrene D-4-ol

3D Structure

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ADMET Properties (via admetSAR 2)

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Target Value Probability (raw) Probability (%)
Human Intestinal Absorption + 0.9968 99.68%
Caco-2 + 0.8678 86.78%
Blood Brain Barrier + 0.6500 65.00%
Human oral bioavailability + 0.5429 54.29%
Subcellular localzation Lysosomes 0.4231 42.31%
OATP2B1 inhibitior - 0.8543 85.43%
OATP1B1 inhibitior + 0.9541 95.41%
OATP1B3 inhibitior + 0.9624 96.24%
MATE1 inhibitior - 0.9800 98.00%
OCT2 inhibitior - 0.7250 72.50%
BSEP inhibitior - 0.7307 73.07%
P-glycoprotein inhibitior - 0.9604 96.04%
P-glycoprotein substrate - 0.8668 86.68%
CYP3A4 substrate - 0.5000 50.00%
CYP2C9 substrate - 0.7759 77.59%
CYP2D6 substrate - 0.7764 77.64%
CYP3A4 inhibition - 0.8491 84.91%
CYP2C9 inhibition - 0.8021 80.21%
CYP2C19 inhibition - 0.8452 84.52%
CYP2D6 inhibition - 0.9424 94.24%
CYP1A2 inhibition - 0.7819 78.19%
CYP2C8 inhibition - 0.8460 84.60%
CYP inhibitory promiscuity - 0.9170 91.70%
UGT catelyzed + 0.7000 70.00%
Carcinogenicity (binary) - 0.8128 81.28%
Carcinogenicity (trinary) Non-required 0.5904 59.04%
Eye corrosion - 0.9038 90.38%
Eye irritation - 0.5771 57.71%
Skin irritation + 0.7754 77.54%
Skin corrosion - 0.9561 95.61%
Ames mutagenesis - 0.7640 76.40%
Human Ether-a-go-go-Related Gene inhibition - 0.5000 50.00%
Micronuclear - 0.9900 99.00%
Hepatotoxicity - 0.5890 58.90%
skin sensitisation + 0.8315 83.15%
Respiratory toxicity - 0.5556 55.56%
Reproductive toxicity - 0.6889 68.89%
Mitochondrial toxicity - 0.6625 66.25%
Nephrotoxicity - 0.6816 68.16%
Acute Oral Toxicity (c) III 0.7956 79.56%
Estrogen receptor binding - 0.9386 93.86%
Androgen receptor binding - 0.8643 86.43%
Thyroid receptor binding + 0.5612 56.12%
Glucocorticoid receptor binding - 0.6479 64.79%
Aromatase binding - 0.9166 91.66%
PPAR gamma - 0.7869 78.69%
Honey bee toxicity - 0.9285 92.85%
Biodegradation + 0.6250 62.50%
Crustacea aquatic toxicity - 0.6300 63.00%
Fish aquatic toxicity + 0.8948 89.48%

Targets

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Proven Targets:

CHEMBL ID UniProt ID Name Min activity Assay type Source
No proven targets yet!

Predicted Targets (via Super-PRED):

CHEMBL ID UniProt ID Name Probability Model accuracy
CHEMBL253 P34972 Cannabinoid CB2 receptor 97.75% 97.25%
CHEMBL3251 P19838 Nuclear factor NF-kappa-B p105 subunit 93.78% 96.09%
CHEMBL5619 P27695 DNA-(apurinic or apyrimidinic site) lyase 90.20% 91.11%
CHEMBL218 P21554 Cannabinoid CB1 receptor 86.58% 96.61%
CHEMBL1994 P08235 Mineralocorticoid receptor 86.53% 100.00%
CHEMBL5608 Q16288 NT-3 growth factor receptor 86.29% 95.89%
CHEMBL1951 P21397 Monoamine oxidase A 85.92% 91.49%
CHEMBL3108638 O15164 Transcription intermediary factor 1-alpha 85.45% 95.56%
CHEMBL1937 Q92769 Histone deacetylase 2 85.17% 94.75%
CHEMBL3137262 O60341 LSD1/CoREST complex 85.00% 97.09%
CHEMBL4227 P25090 Lipoxin A4 receptor 81.39% 100.00%
CHEMBL2581 P07339 Cathepsin D 80.54% 98.95%
CHEMBL3192 Q9BY41 Histone deacetylase 8 80.34% 93.99%
CHEMBL3130 O00329 PI3-kinase p110-delta subunit 80.33% 96.47%

Plants that contains it

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Below are displayed all the plants proven (via scientific papers) to contain this compound!
To see more specific details click the taxa you are interested in.
Ajuga chamaepitys
Cleome chrysantha
Daniellia oliveri
Foeniculum vulgare
Pinus sylvestris
Zanthoxylum bungeanum
Zanthoxylum schinifolium
Zingiber officinale

Cross-Links

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PubChem 5352847
NPASS NPC27544
LOTUS LTS0238425
wikiData Q67879906