2-Pyrrolidinemethanol, 3-hydroxy-, (2R,3S)-

Details

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Internal ID c4238842-c632-4b05-9b4c-25037e5aebe2
Taxonomy Organoheterocyclic compounds > Pyrrolidines
IUPAC Name (2R,3S)-2-(hydroxymethyl)pyrrolidin-3-ol
SMILES (Canonical) C1CNC(C1O)CO
SMILES (Isomeric) C1CN[C@@H]([C@H]1O)CO
InChI InChI=1S/C5H11NO2/c7-3-4-5(8)1-2-6-4/h4-8H,1-3H2/t4-,5+/m1/s1
InChI Key TYLFLHPQWQQWRD-UHNVWZDZSA-N
Popularity 5 references in papers

Physical and Chemical Properties

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Molecular Formula C5H11NO2
Molecular Weight 117.15 g/mol
Exact Mass 117.078978594 g/mol
Topological Polar Surface Area (TPSA) 52.50 Ų
XlogP -0.80
Atomic LogP (AlogP) -1.30
H-Bond Acceptor 3
H-Bond Donor 3
Rotatable Bonds 1

Synonyms

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2-Pyrrolidinemethanol, 3-hydroxy-, (2R,3S)-
(2R,3S)-2-(hydroxymethyl)pyrrolidin-3-ol
CHEMBL408355
CYB-3
starbld0039766
(2r,3s)-2-hydroxymethyl-pyrrolidin-3-ol
SCHEMBL532466
TYLFLHPQWQQWRD-UHNVWZDZSA-N
BDBM50375512
2R-Hydroxymethyl-3S-hydroxypyrolidine
There are more than 10 synonyms. If you wish to see them all click here.

2D Structure

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2D Structure of 2-Pyrrolidinemethanol, 3-hydroxy-, (2R,3S)-

3D Structure

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ADMET Properties (via admetSAR 2)

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Target Value Probability (raw) Probability (%)
Human Intestinal Absorption + 0.9506 95.06%
Caco-2 - 0.8083 80.83%
Blood Brain Barrier + 0.6000 60.00%
Human oral bioavailability + 0.6286 62.86%
Subcellular localzation Mitochondria 0.5180 51.80%
OATP2B1 inhibitior - 0.8443 84.43%
OATP1B1 inhibitior + 0.9665 96.65%
OATP1B3 inhibitior + 0.9497 94.97%
MATE1 inhibitior - 0.9800 98.00%
OCT2 inhibitior - 0.6750 67.50%
BSEP inhibitior - 0.9613 96.13%
P-glycoprotein inhibitior - 0.9814 98.14%
P-glycoprotein substrate - 0.9248 92.48%
CYP3A4 substrate - 0.6974 69.74%
CYP2C9 substrate - 1.0000 100.00%
CYP2D6 substrate + 0.5316 53.16%
CYP3A4 inhibition - 0.9955 99.55%
CYP2C9 inhibition - 0.9494 94.94%
CYP2C19 inhibition - 0.9439 94.39%
CYP2D6 inhibition - 0.8310 83.10%
CYP1A2 inhibition - 0.8572 85.72%
CYP2C8 inhibition - 0.9827 98.27%
CYP inhibitory promiscuity - 0.9746 97.46%
UGT catelyzed + 0.8000 80.00%
Carcinogenicity (binary) - 0.9300 93.00%
Carcinogenicity (trinary) Non-required 0.6542 65.42%
Eye corrosion - 0.8333 83.33%
Eye irritation + 0.9350 93.50%
Skin irritation - 0.6533 65.33%
Skin corrosion - 0.7143 71.43%
Ames mutagenesis - 0.7800 78.00%
Human Ether-a-go-go-Related Gene inhibition - 0.5721 57.21%
Micronuclear - 0.6100 61.00%
Hepatotoxicity + 0.5658 56.58%
skin sensitisation - 0.8830 88.30%
Respiratory toxicity - 0.6889 68.89%
Reproductive toxicity + 0.5556 55.56%
Mitochondrial toxicity + 0.6750 67.50%
Nephrotoxicity + 0.4619 46.19%
Acute Oral Toxicity (c) III 0.5945 59.45%
Estrogen receptor binding - 0.9156 91.56%
Androgen receptor binding - 0.8412 84.12%
Thyroid receptor binding - 0.8646 86.46%
Glucocorticoid receptor binding - 0.8773 87.73%
Aromatase binding - 0.8534 85.34%
PPAR gamma - 0.8911 89.11%
Honey bee toxicity - 0.9214 92.14%
Biodegradation + 0.7000 70.00%
Crustacea aquatic toxicity - 0.7200 72.00%
Fish aquatic toxicity - 0.9895 98.95%

Targets

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Proven Targets:

CHEMBL ID UniProt ID Name Min activity Assay type Source
CHEMBL5272 P35573 Glycogen debranching enzyme 48000 nM
IC50
PMID: 18258441

Predicted Targets (via Super-PRED):

CHEMBL ID UniProt ID Name Probability Model accuracy
CHEMBL3137262 O60341 LSD1/CoREST complex 96.17% 97.09%
CHEMBL3251 P19838 Nuclear factor NF-kappa-B p105 subunit 91.72% 96.09%
CHEMBL226 P30542 Adenosine A1 receptor 89.44% 95.93%
CHEMBL4394 Q9NYA1 Sphingosine kinase 1 89.30% 96.03%
CHEMBL1907589 P17787 Neuronal acetylcholine receptor; alpha4/beta2 89.10% 94.55%
CHEMBL253 P34972 Cannabinoid CB2 receptor 87.90% 97.25%
CHEMBL2996 Q05655 Protein kinase C delta 84.79% 97.79%
CHEMBL1937 Q92769 Histone deacetylase 2 82.30% 94.75%
CHEMBL4187 Q99250 Sodium channel protein type II alpha subunit 80.87% 95.50%
CHEMBL228 P31645 Serotonin transporter 80.75% 95.51%
CHEMBL5608 Q16288 NT-3 growth factor receptor 80.42% 95.89%
CHEMBL2581 P07339 Cathepsin D 80.20% 98.95%

Plants that contains it

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Below are displayed all the plants proven (via scientific papers) to contain this compound!
To see more specific details click the taxa you are interested in.
Castanospermum australe
Clinopodium vulgare
Commiphora sphaerocarpa
Erythrina speciosa
Helichrysum drakensbergense
Piper divaricatum
Prosopis africana
Prunus prostrata
Richteria pyrethroides
Santolina pectinata

Cross-Links

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PubChem 11073391
NPASS NPC272396
ChEMBL CHEMBL408355
LOTUS LTS0094411
wikiData Q105267397