methyl (2S,3S,4S,5R,6R)-6-[[(3S,4S,4aR,6aR,6bS,8aR,9R,12aS,14aR,14bR)-9-[(2S,3R,4S,5S)-4,5-dihydroxy-3-[(2S,3R,4S,5S,6R)-3,4,5-trihydroxy-6-(hydroxymethyl)oxan-2-yl]oxyoxan-2-yl]oxy-4-(hydroxymethyl)-4,6a,6b,8a,11,11,14b-heptamethyl-1,2,3,4a,5,6,7,8,9,10,12,12a,14,14a-tetradecahydropicen-3-yl]oxy]-5-[(2S,3R,4S,5R,6R)-4,5-dihydroxy-6-(hydroxymethyl)-3-[(2S,3R,4R,5R,6S)-3,4,5-trihydroxy-6-methyloxan-2-yl]oxyoxan-2-yl]oxy-3,4-dihydroxyoxane-2-carboxylate

Details

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Internal ID 5de2ea08-8425-4d67-b920-929c51c29516
Taxonomy Lipids and lipid-like molecules > Prenol lipids > Terpene glycosides > Triterpene glycosides > Triterpene saponins
IUPAC Name methyl (2S,3S,4S,5R,6R)-6-[[(3S,4S,4aR,6aR,6bS,8aR,9R,12aS,14aR,14bR)-9-[(2S,3R,4S,5S)-4,5-dihydroxy-3-[(2S,3R,4S,5S,6R)-3,4,5-trihydroxy-6-(hydroxymethyl)oxan-2-yl]oxyoxan-2-yl]oxy-4-(hydroxymethyl)-4,6a,6b,8a,11,11,14b-heptamethyl-1,2,3,4a,5,6,7,8,9,10,12,12a,14,14a-tetradecahydropicen-3-yl]oxy]-5-[(2S,3R,4S,5R,6R)-4,5-dihydroxy-6-(hydroxymethyl)-3-[(2S,3R,4R,5R,6S)-3,4,5-trihydroxy-6-methyloxan-2-yl]oxyoxan-2-yl]oxy-3,4-dihydroxyoxane-2-carboxylate
SMILES (Canonical) CC1C(C(C(C(O1)OC2C(C(C(OC2OC3C(C(C(OC3OC4CCC5(C(C4(C)CO)CCC6(C5CC=C7C6(CCC8(C7CC(CC8OC9C(C(C(CO9)O)O)OC1C(C(C(C(O1)CO)O)O)O)(C)C)C)C)C)C)C(=O)OC)O)O)CO)O)O)O)O)O
SMILES (Isomeric) C[C@H]1[C@@H]([C@H]([C@H]([C@@H](O1)O[C@@H]2[C@H]([C@H]([C@H](O[C@H]2O[C@@H]3[C@H]([C@@H]([C@H](O[C@H]3O[C@H]4CC[C@]5([C@H]([C@@]4(C)CO)CC[C@@]6([C@@H]5CC=C7[C@]6(CC[C@@]8([C@H]7CC(C[C@H]8O[C@H]9[C@@H]([C@H]([C@H](CO9)O)O)O[C@H]1[C@@H]([C@H]([C@@H]([C@H](O1)CO)O)O)O)(C)C)C)C)C)C)C(=O)OC)O)O)CO)O)O)O)O)O
InChI InChI=1S/C60H98O27/c1-24-34(65)38(69)43(74)50(79-24)86-47-40(71)37(68)29(21-62)81-53(47)87-48-42(73)41(72)45(49(76)77-9)84-54(48)82-32-13-14-57(5)30(58(32,6)23-63)12-15-60(8)31(57)11-10-25-26-18-55(2,3)19-33(56(26,4)16-17-59(25,60)7)83-52-46(35(66)27(64)22-78-52)85-51-44(75)39(70)36(67)28(20-61)80-51/h10,24,26-48,50-54,61-75H,11-23H2,1-9H3/t24-,26-,27-,28+,29+,30+,31+,32-,33+,34-,35-,36+,37-,38+,39-,40-,41-,42-,43+,44+,45-,46+,47+,48+,50-,51-,52-,53-,54+,56+,57-,58+,59+,60+/m0/s1
InChI Key KIADFIWOKQFFAY-UHFVFFEDSA-N
Popularity 0 references in papers

Physical and Chemical Properties

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Molecular Formula C60H98O27
Molecular Weight 1251.40 g/mol
Exact Mass 1250.62954785 g/mol
Topological Polar Surface Area (TPSA) 422.00 Ų
XlogP -0.40
Atomic LogP (AlogP) -2.92
H-Bond Acceptor 27
H-Bond Donor 15
Rotatable Bonds 14

Synonyms

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There are no found synonyms.

2D Structure

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2D Structure of methyl (2S,3S,4S,5R,6R)-6-[[(3S,4S,4aR,6aR,6bS,8aR,9R,12aS,14aR,14bR)-9-[(2S,3R,4S,5S)-4,5-dihydroxy-3-[(2S,3R,4S,5S,6R)-3,4,5-trihydroxy-6-(hydroxymethyl)oxan-2-yl]oxyoxan-2-yl]oxy-4-(hydroxymethyl)-4,6a,6b,8a,11,11,14b-heptamethyl-1,2,3,4a,5,6,7,8,9,10,12,12a,14,14a-tetradecahydropicen-3-yl]oxy]-5-[(2S,3R,4S,5R,6R)-4,5-dihydroxy-6-(hydroxymethyl)-3-[(2S,3R,4R,5R,6S)-3,4,5-trihydroxy-6-methyloxan-2-yl]oxyoxan-2-yl]oxy-3,4-dihydroxyoxane-2-carboxylate

3D Structure

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ADMET Properties (via admetSAR 2)

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Target Value Probability (raw) Probability (%)
Human Intestinal Absorption + 0.7768 77.68%
Caco-2 - 0.8826 88.26%
Blood Brain Barrier - 0.6500 65.00%
Human oral bioavailability - 0.8143 81.43%
Subcellular localzation Mitochondria 0.8363 83.63%
OATP2B1 inhibitior - 1.0000 100.00%
OATP1B1 inhibitior + 0.8317 83.17%
OATP1B3 inhibitior - 0.4203 42.03%
MATE1 inhibitior - 0.9812 98.12%
OCT2 inhibitior - 0.6750 67.50%
BSEP inhibitior + 0.9129 91.29%
P-glycoprotein inhibitior + 0.7466 74.66%
P-glycoprotein substrate + 0.5137 51.37%
CYP3A4 substrate + 0.7411 74.11%
CYP2C9 substrate - 1.0000 100.00%
CYP2D6 substrate - 0.8776 87.76%
CYP3A4 inhibition - 0.9376 93.76%
CYP2C9 inhibition - 0.8801 88.01%
CYP2C19 inhibition - 0.8916 89.16%
CYP2D6 inhibition - 0.9410 94.10%
CYP1A2 inhibition - 0.8965 89.65%
CYP2C8 inhibition + 0.7599 75.99%
CYP inhibitory promiscuity - 0.9714 97.14%
UGT catelyzed + 0.6000 60.00%
Carcinogenicity (binary) - 0.9700 97.00%
Carcinogenicity (trinary) Non-required 0.6190 61.90%
Eye corrosion - 0.9892 98.92%
Eye irritation - 0.8991 89.91%
Skin irritation - 0.6475 64.75%
Skin corrosion - 0.9466 94.66%
Ames mutagenesis - 0.6500 65.00%
Human Ether-a-go-go-Related Gene inhibition + 0.7819 78.19%
Micronuclear - 0.8400 84.00%
Hepatotoxicity - 0.8250 82.50%
skin sensitisation - 0.8860 88.60%
Respiratory toxicity - 0.5778 57.78%
Reproductive toxicity + 0.9111 91.11%
Mitochondrial toxicity - 0.7500 75.00%
Nephrotoxicity - 0.8238 82.38%
Acute Oral Toxicity (c) III 0.7315 73.15%
Estrogen receptor binding + 0.7680 76.80%
Androgen receptor binding + 0.7484 74.84%
Thyroid receptor binding + 0.5982 59.82%
Glucocorticoid receptor binding + 0.7896 78.96%
Aromatase binding + 0.6777 67.77%
PPAR gamma + 0.8226 82.26%
Honey bee toxicity - 0.6543 65.43%
Biodegradation - 0.7750 77.50%
Crustacea aquatic toxicity - 0.5800 58.00%
Fish aquatic toxicity + 0.8930 89.30%

Targets

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Proven Targets:

CHEMBL ID UniProt ID Name Min activity Assay type Source
No proven targets yet!

Predicted Targets (via Super-PRED):

CHEMBL ID UniProt ID Name Probability Model accuracy
CHEMBL5619 P27695 DNA-(apurinic or apyrimidinic site) lyase 98.35% 91.11%
CHEMBL3714130 P46095 G-protein coupled receptor 6 96.45% 97.36%
CHEMBL3251 P19838 Nuclear factor NF-kappa-B p105 subunit 95.06% 96.09%
CHEMBL253 P34972 Cannabinoid CB2 receptor 90.93% 97.25%
CHEMBL221 P23219 Cyclooxygenase-1 90.34% 90.17%
CHEMBL3137262 O60341 LSD1/CoREST complex 88.79% 97.09%
CHEMBL2007 P16234 Platelet-derived growth factor receptor alpha 88.72% 91.07%
CHEMBL4303 P08238 Heat shock protein HSP 90-beta 87.39% 96.77%
CHEMBL2111367 P27986 PI3-kinase p110-alpha/p85-alpha 87.21% 94.33%
CHEMBL3108638 O15164 Transcription intermediary factor 1-alpha 86.76% 95.56%
CHEMBL4203 Q9HAZ1 Dual specificity protein kinase CLK4 86.67% 94.45%
CHEMBL2581 P07339 Cathepsin D 84.97% 98.95%
CHEMBL2635 P51452 Dual specificity protein phosphatase 3 84.77% 94.00%
CHEMBL4187 Q99250 Sodium channel protein type II alpha subunit 84.70% 95.50%
CHEMBL1293249 Q13887 Kruppel-like factor 5 84.48% 86.33%
CHEMBL1994 P08235 Mineralocorticoid receptor 83.58% 100.00%
CHEMBL2782 P35610 Acyl coenzyme A:cholesterol acyltransferase 1 82.44% 91.65%
CHEMBL3807 P17706 T-cell protein-tyrosine phosphatase 82.05% 93.00%
CHEMBL5028 O14672 ADAM10 81.80% 97.50%
CHEMBL1293294 P51151 Ras-related protein Rab-9A 81.72% 87.67%
CHEMBL5163 Q9NY46 Sodium channel protein type III alpha subunit 80.81% 96.90%
CHEMBL2373 P21730 C5a anaphylatoxin chemotactic receptor 80.25% 92.62%

Cross-Links

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PubChem 21636205
NPASS NPC155251
LOTUS LTS0102474
wikiData Q105141409