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Solanum habrochaites

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Table of Contents

Details
Description
Synonyms
Common Names
Subtypes (subspecies, varieties, subvarieties, forms)
Germination/Propagation
Distribution
Links to other databases
Genome
Scientific Literature
Phytochemical Profile
Biological Material
Contributors
Collections

Details Top

Internal ID UUID644041ae4233f433252129
Scientific name Solanum habrochaites
Authority S.Knapp & D.M.Spooner
First published in Novon 9(3): 375. 1999.

Description Top

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Synonyms Top

Scientific name Authority First published in
Lycopersicon agrimonifolium Hort. Berol. ex Sendtn. Fl. Bras. (Martius) 10: 125. 1846
Lycopersicon agrimoniifolium Herb. Berol. ex Dunal Prodr. [A. P. de Candolle] 13(1): 27. 1852
Lycopersicon agrimoniifolium Dunal Prodr. [A. P. de Candolle] 13(1): 24. 1852
Lycopersicon hirsutum Dunal Solan. Syn. 4. 1816
Lycopersicon hirsutum var. agrimoniifolium (Dunal) Luckwill Aberdeen Univ. Studies 120: 36. 1943.
Lycopersicon hirsutum var. glabratum (C.H.Mull.) Luckwill Aberdeen Univ. Studies 120: 36. 1943.
Solanum agrimonifolium (Dunal) J.F.Macbr. Publ. Field Mus. Nat. Hist., Bot. 13(5-B,1): 159. 1962.
Solanum agrimoniifolium Pav. ex Dunal Prodr. [A. P. de Candolle] 13(1): 25. 1852.
Lycopersicon hirsutum f. glabratum C.H.Mull. U. S. Dept. Agric. Misc. Publ. 382 [383??]: 22. 1940.
Lycopersicon hirsutum f. glabratum (C.H.Mull.) C.M.Rick, Fobes & S.D.Tanksley Pl. Syst. Evol. 132: 280. 1979

Common names Top

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Subspecies (abbr. subsp./ssp.) Top

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Varieties (abbr. var.) Top

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Subvarieties (abbr. subvar.) Top

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Forms (abbr. f.) Top

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Germination/Propagation Top

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Distribution (via POWO/KEW) Top

Legend for the distribution data:
- Doubtful data
- Extinct
- Introduced
- Native

Links to other databases Top

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Database ID/link to page
World Flora Online wfo-0001028281
Tropicos 50152961
KEW urn:lsid:ipni.org:names:1009879-1
The Plant List tro-50152961
Open Tree Of Life 885264
NCBI Taxonomy 62890
IUCN Red List 71781788
IPNI 1009879-1
GBIF 2929599
EPPO LYPHI
USDA GRIN 415222
Wikipedia Solanum_habrochaites

Genomes (via NCBI) Top

Below is displayed the reference genome only!
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Accession Assembly
Name Level Submitter Released Coverage Size
GCA_027704765.1 ASM2770476v1 Scaffold Cornell University 2023-01-11 32.4x 915.24 Mb

Scientific Literature Top

Below are displayed the latest 15 articles published in PMC (PubMed Central®) and other sources (DOI number only)!
If you wish to see all the related articles click here.
Title Authors Publication Released IDs
Strategies, Achievements, and Potential Challenges of Plant and Microbial Chassis in the Biosynthesis of Plant Secondary Metabolites Han T, Miao G Molecules 02-May-2024
PMCID:PMC11085123
doi:10.3390/molecules29092106
PMID:38731602
Discovering a mitochondrion-localized BAHD acyltransferase involved in calystegine biosynthesis and engineering the production of 3β-tigloyloxytropane Zeng J, Liu X, Dong Z, Zhang F, Qiu F, Zhong M, Zhao T, Yang C, Zeng L, Lan X, Zhang H, Zhou J, Chen M, Tang K, Liao Z Nat Commun 29-Apr-2024
PMCID:PMC11058270
doi:10.1038/s41467-024-47968-0
PMID:38684703
Identification, Classification, and Transcriptional Analysis of Rab GTPase Genes from Tomato (Solanum lycopersicum) Reveals Salt Stress Response Genes Soto F, San Martín-Davison A, Salinas-Cornejo J, Madrid-Espinoza J, Ruiz-Lara S Genes (Basel) 03-Apr-2024
PMCID:PMC11049601
doi:10.3390/genes15040453
PMID:38674387
Plant Immunity against Tobamoviruses Zheng X, Li Y, Liu Y Viruses 29-Mar-2024
PMCID:PMC11054417
doi:10.3390/v16040530
PMID:38675873
Trading acyls and swapping sugars: metabolic innovations in Solanum trichomes Fiesel PD, Kerwin RE, Daniel Jones A, Last RL bioRxiv 19-Mar-2024
PMCID:PMC10274652
doi:10.1101/2023.06.05.542877
PMID:37333341
Systemically functional characterization of regiospecific flavonoid O-methyltransferases from Glycine max Feng B, Jiang Y, Li X, Wang Y, Ren Z, Lu J, Yan X, Zhou Z, Wang P Synth Syst Biotechnol 15-Mar-2024
PMCID:PMC10972763
doi:10.1016/j.synbio.2024.03.009
PMID:38549618
Evaluation of Tomato Germplasm against Tomato Brown Rugose Fruit Virus and Identification of Resistance in Solanum pimpinellifolium Jaiswal N, Chanda B, Gilliard A, Shi A, Ling KS Plants (Basel) 21-Feb-2024
PMCID:PMC10934377
doi:10.3390/plants13050581
PMID:38475428
Integrated transcriptome and DNA methylome analysis reveal the biological base of increased resistance to gray leaf spot and growth inhibition in interspecific grafted tomato scions Liu C, Jia Y, He L, Li H, Song J, Ji L, Wang C BMC Plant Biol 21-Feb-2024
PMCID:PMC10880203
doi:10.1186/s12870-024-04764-8
PMID:38383283
Unveiling Molecular Effects of the Secondary Metabolite 2-Dodecanone in the Model Hymenopteran Nasonia vitripennis Planelló R, Aquilino M, Beaugeard L, Llorente L, Herrero Ó, Siaussat D, Lécureuil C Toxics 18-Feb-2024
PMCID:PMC10892068
doi:10.3390/toxics12020159
PMID:38393254
Unveiling the dynamic relationship of viruses and/or symbiotic bacteria with plant resilience in abiotic stress Sharma V, Mohammed SA, Devi N, Vats G, Tuli HS, Saini AK, Dhir YW, Dhir S, Singh B Stress Biol 05-Feb-2024
PMCID:PMC10838894
doi:10.1007/s44154-023-00126-w
PMID:38311681
Mapping phenotypic performance and novel SNPs for cold tolerance in tomato (Solanum lycopersicum) genotypes through GWAS and population genetics Shah LR, Ahmed N, Hussain K, Mansoor S, Khan T, Khan I, Narayan S, Afroza B, Murtaza I, Shikari AB, Bhat B, Masoodi KZ BMC Genom Data 27-Jan-2024
PMCID:PMC10822167
doi:10.1186/s12863-024-01190-5
PMID:38281048
Integration of metabolomics and transcriptomics reveals the regulation mechanism of the phenylpropanoid biosynthesis pathway in insect resistance traits in Solanum habrochaites Wang M, Wang Y, Li X, Zhang Y, Chen X, Liu J, Qiua Y, Wang A Hortic Res 09-Jan-2024
PMCID:PMC10857935
doi:10.1093/hr/uhad277
PMID:38344649
Intra- and inter-specific reproductive barriers in the tomato clade Moreels P, Bigot S, Defalque C, Correa F, Martinez JP, Lutts S, Quinet M Front Plant Sci 08-Dec-2023
PMCID:PMC10739309
doi:10.3389/fpls.2023.1326689
PMID:38143584
Complexation and evolution of cis‐prenyltransferase homologues in Cinnamomum kanehirae deduced from kinetic and functional characterizations Liu J, Liang P Protein Sci 01-Dec-2023
PMCID:PMC10661081
doi:10.1002/pro.4828
PMID:37916302
Thermotolerance of tomato plants grafted onto wild relative rootstocks Lee C, Harvey JT, Nagila A, Qin K, Leskovar DI Front Plant Sci 20-Nov-2023
PMCID:PMC10694270
doi:10.3389/fpls.2023.1252456
PMID:38053760

Phytochemical Profile Top

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Below are displayed the proven (via scientific papers) natural compounds!
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Name PubChem ID Canonical SMILES MW Found in Proof
> Benzenoids / Benzene and substituted derivatives / Styrenes
Butyric Acid Cinnamyl Ester 7664 Click to see CCCC(=O)OCC=CC1=CC=CC=C1 204.26 unknown https://doi.org/10.1080/10412905.1995.9698562
Cinnamyl butyrate 5355254 Click to see CCCC(=O)OCC=CC1=CC=CC=C1 204.26 unknown https://doi.org/10.1080/10412905.1995.9698562
Cinnamyl isobutyrate 5355851 Click to see CC(C)C(=O)OCC=CC1=CC=CC=C1 204.26 unknown https://doi.org/10.1080/10412905.1995.9698562
> Lipids and lipid-like molecules / Prenol lipids / Monoterpenoids / Acyclic monoterpenoids
Nerol 643820 Click to see CC(=CCCC(=CCO)C)C 154.25 unknown https://doi.org/10.1080/10412905.1995.9698562
> Lipids and lipid-like molecules / Prenol lipids / Monoterpenoids / Bicyclic monoterpenoids
(2E)-2-methyl-5-[(1S,5S,6S)-6-methyl-2-methylidenebicyclo[3.1.1]heptan-6-yl]pent-2-enoic acid 11958248 Click to see CC(=CCCC1(C2CCC(=C)C1C2)C)C(=O)O 234.33 unknown https://doi.org/10.1007/BF01019351
(E)-5-[(1S,5S,6S)-2,6-dimethyl-6-bicyclo[3.1.1]hept-2-enyl]-2-methylpent-2-enoic acid 11031804 Click to see CC1=CCC2CC1C2(C)CCC=C(C)C(=O)O 234.33 unknown https://doi.org/10.1007/BF01019351
2-Methyl-5-(6-methyl-2-methylidene-6-bicyclo[3.1.1]heptanyl)pent-2-enoic acid 73153525 Click to see CC(=CCCC1(C2CCC(=C)C1C2)C)C(=O)O 234.33 unknown https://doi.org/10.1007/BF01019351
5-(2,6-Dimethyl-6-bicyclo[3.1.1]hept-2-enyl)-2-methylpent-2-enoic acid 73832369 Click to see CC1=CCC2CC1C2(C)CCC=C(C)C(=O)O 234.33 unknown https://doi.org/10.1007/BF01019351
Bergamotene 521569 Click to see CC(=CCCC1(C2CCC(=C)C1C2)C)C 204.35 unknown https://doi.org/10.1080/10412905.1995.9698562
beta-Pinene 14896 Click to see CC1(C2CCC(=C)C1C2)C 136.23 unknown https://doi.org/10.1080/10412905.1995.9698562
Camphene 6616 Click to see CC1(C2CCC(C2)C1=C)C 136.23 unknown https://doi.org/10.1080/10412905.1995.9698562
> Lipids and lipid-like molecules / Prenol lipids / Monoterpenoids / Menthane monoterpenoids
Piperitone 6987 Click to see CC1=CC(=O)C(CC1)C(C)C 152.23 unknown https://doi.org/10.1080/10412905.1995.9698562
> Lipids and lipid-like molecules / Prenol lipids / Sesquiterpenoids
(-)-Zingiberene 521253 Click to see CC1=CCC(C=C1)C(C)CCC=C(C)C 204.35 unknown https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3193516/
(1Z,6E)-gamma-humulene 14038477 Click to see CC1=CCCC(=C)C=CC(CCC1)(C)C 204.35 unknown https://doi.org/10.1080/10412905.1995.9698562
3,7,11-Trimethyldodeca-2,6,10-trienoic acid 93051 Click to see CC(=CCCC(=CCCC(=CC(=O)O)C)C)C 236.35 unknown https://doi.org/10.1007/BF00980597
7-Epizingiberene 21729595 Click to see CC1=CCC(C=C1)C(C)CCC=C(C)C 204.35 unknown https://doi.org/10.1016/S0040-4020(01)89415-1
https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3193516/
alpha-Curcumene 92139 Click to see CC1=CC=C(C=C1)C(C)CCC=C(C)C 202.33 unknown https://www.ncbi.nlm.nih.gov/pmc/articles/PMC1075798/
https://doi.org/10.1016/S0040-4020(01)89415-1
beta-Farnesene 5281517 Click to see CC(=CCCC(=CCCC(=C)C=C)C)C 204.35 unknown https://doi.org/10.1080/10412905.1995.9698562
Caryophyllene 5281515 Click to see CC1=CCCC(=C)C2CC(C2CC1)(C)C 204.35 unknown https://doi.org/10.1080/10412905.1995.9698562
CID 16396350 16396350 Click to see CC1(CCCC2(C3C1C(C2=C)CC3)C)C 204.35 unknown https://doi.org/10.1080/10412905.1995.9698562
Cyclohexene, 4-ethenyl-4-methyl-3-(1-methylethenyl)-1-(1-methylethyl)-, (3R-trans)- 89316 Click to see CC(C)C1=CC(C(CC1)(C)C=C)C(=C)C 204.35 unknown https://doi.org/10.1080/10412905.1995.9698562
delta-Elemene 12309449 Click to see CC(C)C1=CC(C(CC1)(C)C=C)C(=C)C 204.35 unknown https://doi.org/10.1080/10412905.1995.9698562
Farnesoic acid 5275507 Click to see CC(=CCCC(=CCCC(=CC(=O)O)C)C)C 236.35 unknown https://doi.org/10.1007/BF00980597
gamma-Bisabolene, (Z)- 3033866 Click to see CC1=CCC(=C(C)CCC=C(C)C)CC1 204.35 unknown https://www.ncbi.nlm.nih.gov/pmc/articles/PMC1075798/
Longifolene 289151 Click to see CC1(CCCC2(C3C1C(C2=C)CC3)C)C 204.35 unknown https://doi.org/10.1080/10412905.1995.9698562
Zingiberene 92776 Click to see CC1=CCC(C=C1)C(C)CCC=C(C)C 204.35 unknown https://doi.org/10.1021/JF00085A047
https://www.ncbi.nlm.nih.gov/pmc/articles/PMC1075798/
> Lipids and lipid-like molecules / Prenol lipids / Sesquiterpenoids / Elemane sesquiterpenoids
Beta-Elemene 6918391 Click to see CC(=C)C1CCC(C(C1)C(=C)C)(C)C=C 204.35 unknown https://doi.org/10.1080/10412905.1995.9698562
> Lipids and lipid-like molecules / Prenol lipids / Sesquiterpenoids / Eudesmane, isoeudesmane or cycloeudesmane sesquiterpenoids
beta-Selinene 442393 Click to see CC(=C)C1CCC2(CCCC(=C)C2C1)C 204.35 unknown https://doi.org/10.1080/10412905.1995.9698562
> Organic oxygen compounds / Organooxygen compounds / Carbonyl compounds / Ketones
2-Tridecanone 11622 Click to see CCCCCCCCCCCC(=O)C 198.34 unknown https://doi.org/10.1021/JF00085A047
https://doi.org/10.1023/B:JOEC.0000006466.63606.0D
https://doi.org/10.1007/BF01020164
2-Undecanone 8163 Click to see CCCCCCCCCC(=O)C 170.29 unknown https://doi.org/10.1007/BF01020164
https://doi.org/10.1023/B:JOEC.0000006466.63606.0D

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