pelargonidin-3-O-beta-D-glucoside

Details

Top
Internal ID 9cafec3e-2f76-4244-a5be-2059aada876e
Taxonomy Phenylpropanoids and polyketides > Flavonoids > Flavonoid glycosides > Flavonoid O-glycosides > Flavonoid-3-O-glycosides
IUPAC Name 5-hydroxy-2-(4-hydroxyphenyl)-3-[(2S,3R,4S,5S,6R)-3,4,5-trihydroxy-6-(hydroxymethyl)oxan-2-yl]oxychromen-7-one
SMILES (Canonical)
SMILES (Isomeric)
InChI InChI=1S/C21H20O10/c22-8-16-17(26)18(27)19(28)21(31-16)30-15-7-12-13(25)5-11(24)6-14(12)29-20(15)9-1-3-10(23)4-2-9/h1-7,16-19,21-23,25-28H,8H2/t16-,17-,18+,19-,21-/m1/s1
InChI Key LOPAXYRUFHKGFO-GQUPQBGVSA-N
Popularity 10 references in papers

Physical and Chemical Properties

Top
Molecular Formula C21H20O10
Molecular Weight 432.40 g/mol
Exact Mass 432.10564683 g/mol
Topological Polar Surface Area (TPSA) 166.00 Ų
XlogP -0.80
Atomic LogP (AlogP) 0.00
H-Bond Acceptor 10
H-Bond Donor 6
Rotatable Bonds 4

Synonyms

Top
CHEBI:144778
pelargonidin 3-O-beta-D-glucoside betaine
3-(beta-D-glucopyranosyloxy)-7-hydroxy-2-(4-hydroxyphenyl)chromenium-5-olate
5-Hydroxy-2-(4-hydroxyphenyl)-3-[(2S,3R,4S,5S,6R)-3,4,5-trihydroxy-6-(hydroxymethyl)oxan-2-yl]oxychromen-7-one

2D Structure

Top
2D Structure of pelargonidin-3-O-beta-D-glucoside

3D Structure

Top

ADMET Properties (via admetSAR 2)

Top
Target Value Probability (raw) Probability (%)
Human Intestinal Absorption - 0.4823 48.23%
Caco-2 - 0.8896 88.96%
Blood Brain Barrier - 0.7000 70.00%
Human oral bioavailability - 0.8286 82.86%
Subcellular localzation Mitochondria 0.6068 60.68%
OATP2B1 inhibitior + 0.5864 58.64%
OATP1B1 inhibitior + 0.9061 90.61%
OATP1B3 inhibitior + 0.9339 93.39%
MATE1 inhibitior - 0.8400 84.00%
OCT2 inhibitior - 0.8250 82.50%
BSEP inhibitior + 0.6533 65.33%
P-glycoprotein inhibitior - 0.6616 66.16%
P-glycoprotein substrate - 0.8481 84.81%
CYP3A4 substrate + 0.5916 59.16%
CYP2C9 substrate - 0.6762 67.62%
CYP2D6 substrate - 0.8575 85.75%
CYP3A4 inhibition - 0.9193 91.93%
CYP2C9 inhibition - 0.9296 92.96%
CYP2C19 inhibition - 0.9289 92.89%
CYP2D6 inhibition - 0.9513 95.13%
CYP1A2 inhibition - 0.9084 90.84%
CYP2C8 inhibition + 0.7380 73.80%
CYP inhibitory promiscuity - 0.7728 77.28%
UGT catelyzed + 0.6000 60.00%
Carcinogenicity (binary) - 1.0000 100.00%
Carcinogenicity (trinary) Non-required 0.7144 71.44%
Eye corrosion - 0.9917 99.17%
Eye irritation - 0.8053 80.53%
Skin irritation - 0.7926 79.26%
Skin corrosion - 0.9672 96.72%
Ames mutagenesis - 0.6700 67.00%
Human Ether-a-go-go-Related Gene inhibition - 0.6304 63.04%
Micronuclear + 0.5792 57.92%
Hepatotoxicity - 0.7821 78.21%
skin sensitisation - 0.8860 88.60%
Respiratory toxicity - 0.5333 53.33%
Reproductive toxicity + 0.6889 68.89%
Mitochondrial toxicity - 0.5125 51.25%
Nephrotoxicity - 0.6248 62.48%
Acute Oral Toxicity (c) III 0.4045 40.45%
Estrogen receptor binding + 0.7550 75.50%
Androgen receptor binding + 0.7581 75.81%
Thyroid receptor binding + 0.5514 55.14%
Glucocorticoid receptor binding + 0.7033 70.33%
Aromatase binding + 0.6888 68.88%
PPAR gamma + 0.7514 75.14%
Honey bee toxicity - 0.7249 72.49%
Biodegradation - 0.7000 70.00%
Crustacea aquatic toxicity - 0.6299 62.99%
Fish aquatic toxicity + 0.6803 68.03%

Targets

Top

Proven Targets:

CHEMBL ID UniProt ID Name Min activity Assay type Source
No proven targets yet!

Predicted Targets (via Super-PRED):

CHEMBL ID UniProt ID Name Probability Model accuracy
CHEMBL5619 P27695 DNA-(apurinic or apyrimidinic site) lyase 98.22% 91.11%
CHEMBL2581 P07339 Cathepsin D 95.86% 98.95%
CHEMBL2635 P51452 Dual specificity protein phosphatase 3 94.10% 94.00%
CHEMBL1806 P11388 DNA topoisomerase II alpha 93.53% 89.00%
CHEMBL1860 P10827 Thyroid hormone receptor alpha 91.85% 99.15%
CHEMBL3060 Q9Y345 Glycine transporter 2 91.18% 99.17%
CHEMBL4016 P42262 Glutamate receptor ionotropic, AMPA 2 90.57% 86.92%
CHEMBL1293249 Q13887 Kruppel-like factor 5 89.46% 86.33%
CHEMBL3880 P07900 Heat shock protein HSP 90-alpha 89.03% 96.21%
CHEMBL4040 P28482 MAP kinase ERK2 88.58% 83.82%
CHEMBL3194 P02766 Transthyretin 88.13% 90.71%
CHEMBL5339 Q5NUL3 G-protein coupled receptor 120 87.23% 95.78%
CHEMBL4793 Q86TI2 Dipeptidyl peptidase IX 86.08% 96.95%
CHEMBL3251 P19838 Nuclear factor NF-kappa-B p105 subunit 85.58% 96.09%
CHEMBL3401 O75469 Pregnane X receptor 85.05% 94.73%
CHEMBL3108638 O15164 Transcription intermediary factor 1-alpha 85.04% 95.56%
CHEMBL3137262 O60341 LSD1/CoREST complex 84.04% 97.09%
CHEMBL2345 P51812 Ribosomal protein S6 kinase alpha 3 82.36% 95.64%
CHEMBL5608 Q16288 NT-3 growth factor receptor 82.34% 95.89%
CHEMBL3476 O15111 Inhibitor of nuclear factor kappa B kinase alpha subunit 81.10% 95.83%

Plants that contains it

Top
Below are displayed all the plants proven (via scientific papers) to contain this compound!
To see more specific details click the taxa you are interested in.
Fragaria × ananassa
Fragaria vesca
Hyacinthus orientalis
Lablab purpureus
Phaseolus vulgaris
Punica granatum

Cross-Links

Top
PubChem 443649
LOTUS LTS0103335
wikiData Q76100262