Palmidin C

Details

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Internal ID 0bf43deb-4913-4801-a5b5-b487830ae6c5
Taxonomy Benzenoids > Anthracenes
IUPAC Name 10-(4,5-dihydroxy-2-methyl-10-oxo-9H-anthracen-9-yl)-1,3,8-trihydroxy-6-methyl-10H-anthracen-9-one
SMILES (Canonical) CC1=CC2=C(C(=C1)O)C(=O)C3=C(C2C4C5=C(C(=CC(=C5)C)O)C(=O)C6=C4C=C(C=C6O)O)C=CC=C3O
SMILES (Isomeric) CC1=CC2=C(C(=C1)O)C(=O)C3=C(C2C4C5=C(C(=CC(=C5)C)O)C(=O)C6=C4C=C(C=C6O)O)C=CC=C3O
InChI InChI=1S/C30H22O7/c1-12-6-16-23(15-4-3-5-19(32)25(15)29(36)26(16)20(33)8-12)24-17-7-13(2)9-21(34)27(17)30(37)28-18(24)10-14(31)11-22(28)35/h3-11,23-24,31-35H,1-2H3
InChI Key VUUFXTUVVIEIMH-UHFFFAOYSA-N
Popularity 0 references in papers

Physical and Chemical Properties

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Molecular Formula C30H22O7
Molecular Weight 494.50 g/mol
Exact Mass 494.13655304 g/mol
Topological Polar Surface Area (TPSA) 135.00 Ų
XlogP 6.10
Atomic LogP (AlogP) 4.88
H-Bond Acceptor 7
H-Bond Donor 5
Rotatable Bonds 1

Synonyms

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Chrysophanol emodin dianthrone
17177-86-5
UNII-N3SAI83M4B
N3SAI83M4B
(9,9'-Bianthracene)-10,10'(9H,9'H)-dione, 2,4,4',5,5'-pentahydroxy-2',7-dimethyl-
10-(4,5-dihydroxy-2-methyl-10-oxo-9H-anthracen-9-yl)-1,3,8-trihydroxy-6-methyl-10H-anthracen-9-one
Emodin-chrysophanol bianthrone
CHEBI:169358
DTXSID301318558
Q27284523
There are more than 10 synonyms. If you wish to see them all click here.

2D Structure

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2D Structure of Palmidin C

3D Structure

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ADMET Properties (via admetSAR 2)

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Target Value Probability (raw) Probability (%)
Human Intestinal Absorption + 0.9874 98.74%
Caco-2 + 0.5428 54.28%
Blood Brain Barrier - 0.7500 75.00%
Human oral bioavailability + 0.5143 51.43%
Subcellular localzation Mitochondria 0.8606 86.06%
OATP2B1 inhibitior - 0.5652 56.52%
OATP1B1 inhibitior + 0.9003 90.03%
OATP1B3 inhibitior + 0.8447 84.47%
MATE1 inhibitior - 0.8600 86.00%
OCT2 inhibitior - 1.0000 100.00%
BSEP inhibitior + 0.6496 64.96%
P-glycoprotein inhibitior - 0.5760 57.60%
P-glycoprotein substrate - 0.9198 91.98%
CYP3A4 substrate + 0.5211 52.11%
CYP2C9 substrate - 0.8000 80.00%
CYP2D6 substrate - 0.8240 82.40%
CYP3A4 inhibition + 0.5524 55.24%
CYP2C9 inhibition + 0.8601 86.01%
CYP2C19 inhibition - 0.5507 55.07%
CYP2D6 inhibition - 0.6835 68.35%
CYP1A2 inhibition + 0.8675 86.75%
CYP2C8 inhibition + 0.4732 47.32%
CYP inhibitory promiscuity - 0.5054 50.54%
UGT catelyzed - 0.5000 50.00%
Carcinogenicity (binary) - 0.8196 81.96%
Carcinogenicity (trinary) Non-required 0.6526 65.26%
Eye corrosion - 0.9930 99.30%
Eye irritation + 0.5603 56.03%
Skin irritation - 0.5707 57.07%
Skin corrosion - 0.9066 90.66%
Ames mutagenesis + 0.7200 72.00%
Human Ether-a-go-go-Related Gene inhibition + 0.7829 78.29%
Micronuclear + 0.8000 80.00%
Hepatotoxicity + 0.9000 90.00%
skin sensitisation - 0.8811 88.11%
Respiratory toxicity - 0.6000 60.00%
Reproductive toxicity - 0.5889 58.89%
Mitochondrial toxicity - 0.5500 55.00%
Nephrotoxicity + 0.6820 68.20%
Acute Oral Toxicity (c) III 0.7787 77.87%
Estrogen receptor binding + 0.7495 74.95%
Androgen receptor binding + 0.7299 72.99%
Thyroid receptor binding - 0.5501 55.01%
Glucocorticoid receptor binding + 0.7257 72.57%
Aromatase binding - 0.6631 66.31%
PPAR gamma + 0.7591 75.91%
Honey bee toxicity - 0.9302 93.02%
Biodegradation - 0.9000 90.00%
Crustacea aquatic toxicity - 0.5900 59.00%
Fish aquatic toxicity + 0.9843 98.43%

Targets

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Proven Targets:

CHEMBL ID UniProt ID Name Min activity Assay type Source
No proven targets yet!

Predicted Targets (via Super-PRED):

CHEMBL ID UniProt ID Name Probability Model accuracy
CHEMBL2581 P07339 Cathepsin D 97.40% 98.95%
CHEMBL3108638 O15164 Transcription intermediary factor 1-alpha 96.85% 95.56%
CHEMBL5619 P27695 DNA-(apurinic or apyrimidinic site) lyase 94.55% 91.11%
CHEMBL3038477 P67870 Casein kinase II alpha/beta 91.41% 99.23%
CHEMBL1806 P11388 DNA topoisomerase II alpha 91.39% 89.00%
CHEMBL1929 P47989 Xanthine dehydrogenase 90.55% 96.12%
CHEMBL3401 O75469 Pregnane X receptor 90.24% 94.73%
CHEMBL1860 P10827 Thyroid hormone receptor alpha 89.06% 99.15%
CHEMBL5697 Q9GZT9 Egl nine homolog 1 85.72% 93.40%
CHEMBL1907600 Q00535 Cyclin-dependent kinase 5/CDK5 activator 1 85.19% 93.03%
CHEMBL1951 P21397 Monoamine oxidase A 84.93% 91.49%
CHEMBL2146302 O94925 Glutaminase kidney isoform, mitochondrial 81.79% 100.00%
CHEMBL1293249 Q13887 Kruppel-like factor 5 81.02% 86.33%
CHEMBL3251 P19838 Nuclear factor NF-kappa-B p105 subunit 80.89% 96.09%

Plants that contains it

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Below are displayed all the plants proven (via scientific papers) to contain this compound!
To see more specific details click the taxa you are interested in.
Rheum officinale
Rheum palmatum
Rheum tanguticum
Rumex abyssinicus

Cross-Links

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PubChem 5320386
NPASS NPC103299
LOTUS LTS0050072
wikiData Q27284523