NSC-698790;Smilax saponin B

Details

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Internal ID 09f8dc57-26a0-44b7-8e42-c84f298e764f
Taxonomy Lipids and lipid-like molecules > Steroids and steroid derivatives > Steroidal glycosides > Steroidal saponins
IUPAC Name 2-[4-hydroxy-2-(hydroxymethyl)-6-[[6-methoxy-7,9,13-trimethyl-6-[3-methyl-4-[3,4,5-trihydroxy-6-(hydroxymethyl)oxan-2-yl]oxybutyl]-5-oxapentacyclo[10.8.0.02,9.04,8.013,18]icos-18-en-16-yl]oxy]-5-(3,4,5-trihydroxy-6-methyloxan-2-yl)oxyoxan-3-yl]oxy-6-methyloxane-3,4,5-triol
SMILES (Canonical) CC1C2C(CC3C2(CCC4C3CC=C5C4(CCC(C5)OC6C(C(C(C(O6)CO)OC7C(C(C(C(O7)C)O)O)O)O)OC8C(C(C(C(O8)C)O)O)O)C)C)OC1(CCC(C)COC9C(C(C(C(O9)CO)O)O)O)OC
SMILES (Isomeric) CC1C2C(CC3C2(CCC4C3CC=C5C4(CCC(C5)OC6C(C(C(C(O6)CO)OC7C(C(C(C(O7)C)O)O)O)O)OC8C(C(C(C(O8)C)O)O)O)C)C)OC1(CCC(C)COC9C(C(C(C(O9)CO)O)O)O)OC
InChI InChI=1S/C52H86O22/c1-21(20-66-46-40(61)39(60)36(57)31(18-53)70-46)10-15-52(65-7)22(2)33-30(74-52)17-29-27-9-8-25-16-26(11-13-50(25,5)28(27)12-14-51(29,33)6)69-49-45(73-48-42(63)38(59)35(56)24(4)68-48)43(64)44(32(19-54)71-49)72-47-41(62)37(58)34(55)23(3)67-47/h8,21-24,26-49,53-64H,9-20H2,1-7H3
InChI Key HSSJYSJXBOCKQM-UHFFFAOYSA-N
Popularity 29 references in papers

Physical and Chemical Properties

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Molecular Formula C52H86O22
Molecular Weight 1063.20 g/mol
Exact Mass 1062.56107437 g/mol
Topological Polar Surface Area (TPSA) 335.00 Ų
XlogP -0.70
Atomic LogP (AlogP) -1.33
H-Bond Acceptor 22
H-Bond Donor 12
Rotatable Bonds 15

Synonyms

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54522-52-0
NSC-698790;Smilax saponin B
2-[4-Hydroxy-2-(hydroxymethyl)-6-[[6-methoxy-7,9,13-trimethyl-6-[3-methyl-4-[3,4,5-trihydroxy-6-(hydroxymethyl)oxan-2-yl]oxybutyl]-5-oxapentacyclo[10.8.0.02,9.04,8.013,18]icos-18-en-16-yl]oxy]-5-(3,4,5-trihydroxy-6-methyloxan-2-yl)oxyoxan-3-yl]oxy-6-methyloxane-3,4,5-triol
C52H86O22
60478-70-8
CCRIS 4125
NSC698790
NSC698791
C52-H86-O22
Yamogenintetroside B
There are more than 10 synonyms. If you wish to see them all click here.

2D Structure

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2D Structure of NSC-698790;Smilax saponin B

3D Structure

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ADMET Properties (via admetSAR 2)

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Target Value Probability (raw) Probability (%)
Human Intestinal Absorption + 0.7087 70.87%
Caco-2 - 0.8867 88.67%
Blood Brain Barrier - 0.7250 72.50%
Human oral bioavailability - 0.8571 85.71%
Subcellular localzation Mitochondria 0.7516 75.16%
OATP2B1 inhibitior - 1.0000 100.00%
OATP1B1 inhibitior + 0.8740 87.40%
OATP1B3 inhibitior + 0.9050 90.50%
MATE1 inhibitior - 0.9612 96.12%
OCT2 inhibitior - 0.6500 65.00%
BSEP inhibitior + 0.8501 85.01%
P-glycoprotein inhibitior + 0.7426 74.26%
P-glycoprotein substrate + 0.6634 66.34%
CYP3A4 substrate + 0.7498 74.98%
CYP2C9 substrate - 0.8025 80.25%
CYP2D6 substrate - 0.8264 82.64%
CYP3A4 inhibition - 0.9573 95.73%
CYP2C9 inhibition - 0.9148 91.48%
CYP2C19 inhibition - 0.8976 89.76%
CYP2D6 inhibition - 0.9364 93.64%
CYP1A2 inhibition - 0.8921 89.21%
CYP2C8 inhibition + 0.7398 73.98%
CYP inhibitory promiscuity - 0.8927 89.27%
UGT catelyzed - 0.7000 70.00%
Carcinogenicity (binary) - 0.9900 99.00%
Carcinogenicity (trinary) Non-required 0.5259 52.59%
Eye corrosion - 0.9885 98.85%
Eye irritation - 0.9042 90.42%
Skin irritation - 0.6120 61.20%
Skin corrosion - 0.9432 94.32%
Ames mutagenesis - 1.0000 100.00%
Human Ether-a-go-go-Related Gene inhibition + 0.8291 82.91%
Micronuclear - 0.8600 86.00%
Hepatotoxicity - 0.9000 90.00%
skin sensitisation - 0.9159 91.59%
Respiratory toxicity + 0.7000 70.00%
Reproductive toxicity + 0.8778 87.78%
Mitochondrial toxicity - 0.5000 50.00%
Nephrotoxicity - 0.9103 91.03%
Acute Oral Toxicity (c) I 0.4621 46.21%
Estrogen receptor binding + 0.8622 86.22%
Androgen receptor binding + 0.7252 72.52%
Thyroid receptor binding + 0.5574 55.74%
Glucocorticoid receptor binding + 0.7201 72.01%
Aromatase binding + 0.6968 69.68%
PPAR gamma + 0.8013 80.13%
Honey bee toxicity - 0.5942 59.42%
Biodegradation - 0.7500 75.00%
Crustacea aquatic toxicity - 0.5800 58.00%
Fish aquatic toxicity + 0.8970 89.70%

Targets

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Proven Targets:

CHEMBL ID UniProt ID Name Min activity Assay type Source
No proven targets yet!

Predicted Targets (via Super-PRED):

CHEMBL ID UniProt ID Name Probability Model accuracy
CHEMBL3251 P19838 Nuclear factor NF-kappa-B p105 subunit 99.06% 96.09%
CHEMBL5619 P27695 DNA-(apurinic or apyrimidinic site) lyase 98.70% 91.11%
CHEMBL226 P30542 Adenosine A1 receptor 97.74% 95.93%
CHEMBL3137262 O60341 LSD1/CoREST complex 93.35% 97.09%
CHEMBL1994 P08235 Mineralocorticoid receptor 91.83% 100.00%
CHEMBL4203 Q9HAZ1 Dual specificity protein kinase CLK4 91.75% 94.45%
CHEMBL4681 P42330 Aldo-keto-reductase family 1 member C3 91.16% 89.05%
CHEMBL1907603 Q05586 Glutamate NMDA receptor; GRIN1/GRIN2B 90.98% 95.89%
CHEMBL253 P34972 Cannabinoid CB2 receptor 90.33% 97.25%
CHEMBL5608 Q16288 NT-3 growth factor receptor 89.35% 95.89%
CHEMBL2581 P07339 Cathepsin D 89.00% 98.95%
CHEMBL3359 P21462 Formyl peptide receptor 1 88.81% 93.56%
CHEMBL1806 P11388 DNA topoisomerase II alpha 87.68% 89.00%
CHEMBL218 P21554 Cannabinoid CB1 receptor 87.61% 96.61%
CHEMBL1821 P08173 Muscarinic acetylcholine receptor M4 87.06% 94.08%
CHEMBL3401 O75469 Pregnane X receptor 86.92% 94.73%
CHEMBL1293249 Q13887 Kruppel-like factor 5 85.33% 86.33%
CHEMBL1937 Q92769 Histone deacetylase 2 85.07% 94.75%
CHEMBL237 P41145 Kappa opioid receptor 84.81% 98.10%
CHEMBL2140 P48775 Tryptophan 2,3-dioxygenase 83.52% 98.46%
CHEMBL2094135 Q96BI3 Gamma-secretase 83.23% 98.05%
CHEMBL2274 Q9H228 Sphingosine 1-phosphate receptor Edg-8 83.00% 100.00%
CHEMBL4227 P25090 Lipoxin A4 receptor 82.40% 100.00%
CHEMBL2635 P51452 Dual specificity protein phosphatase 3 82.15% 94.00%
CHEMBL1871 P10275 Androgen Receptor 81.27% 96.43%
CHEMBL2955 O95136 Sphingosine 1-phosphate receptor Edg-5 81.19% 92.86%
CHEMBL4581 P52732 Kinesin-like protein 1 80.69% 93.18%
CHEMBL3892 Q99500 Sphingosine 1-phosphate receptor Edg-3 80.67% 97.29%

Plants that contains it

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Cross-Links

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PubChem 500376
NPASS NPC309684
LOTUS LTS0267851
wikiData Q104392991