Cyanidin 3-b-L-arabinoside

Details

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Internal ID 06ff8441-fe60-4a10-bf2f-abeb9d1debc9
Taxonomy Phenylpropanoids and polyketides > Flavonoids > Flavonoid glycosides > Anthocyanins > Anthocyanidin-3-O-glycosides
IUPAC Name 3-[(2R,3R,4R,5S)-3,4-dihydroxy-5-(hydroxymethyl)oxolan-2-yl]oxy-2-(3,4-dihydroxyphenyl)chromenylium-5,7-diol
SMILES (Canonical) C1=CC(=C(C=C1C2=[O+]C3=CC(=CC(=C3C=C2OC4C(C(C(O4)CO)O)O)O)O)O)O
SMILES (Isomeric) C1=CC(=C(C=C1C2=[O+]C3=CC(=CC(=C3C=C2O[C@@H]4[C@@H]([C@H]([C@@H](O4)CO)O)O)O)O)O)O
InChI InChI=1S/C20H18O10/c21-7-16-17(26)18(27)20(30-16)29-15-6-10-12(24)4-9(22)5-14(10)28-19(15)8-1-2-11(23)13(25)3-8/h1-6,16-18,20-21,26-27H,7H2,(H3-,22,23,24,25)/p+1/t16-,17-,18+,20-/m0/s1
InChI Key SBBFXSBQYRSIPP-GNBUJSLZSA-O
Popularity 0 references in papers

Physical and Chemical Properties

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Molecular Formula C20H19O10+
Molecular Weight 419.40 g/mol
Exact Mass 419.09782180 g/mol
Topological Polar Surface Area (TPSA) 161.00 Ų
XlogP 0.00
Atomic LogP (AlogP) 1.02
H-Bond Acceptor 9
H-Bond Donor 7
Rotatable Bonds 4

Synonyms

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CHEBI:176345
DTXSID801341481
3-[(2R,3R,4R,5S)-3,4-dihydroxy-5-(hydroxymethyl)oxolan-2-yl]oxy-2-(3,4-dihydroxyphenyl)chromenylium-5,7-diol

2D Structure

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2D Structure of Cyanidin 3-b-L-arabinoside

3D Structure

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ADMET Properties (via admetSAR 2)

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Target Value Probability (raw) Probability (%)
Human Intestinal Absorption - 0.7078 70.78%
Caco-2 - 0.8748 87.48%
Blood Brain Barrier - 0.5500 55.00%
Human oral bioavailability - 0.7286 72.86%
Subcellular localzation Mitochondria 0.5496 54.96%
OATP2B1 inhibitior + 0.5840 58.40%
OATP1B1 inhibitior + 0.9309 93.09%
OATP1B3 inhibitior + 0.9417 94.17%
MATE1 inhibitior - 0.8800 88.00%
OCT2 inhibitior - 0.8000 80.00%
BSEP inhibitior - 0.6613 66.13%
P-glycoprotein inhibitior - 0.6588 65.88%
P-glycoprotein substrate - 0.8658 86.58%
CYP3A4 substrate + 0.5667 56.67%
CYP2C9 substrate - 0.8060 80.60%
CYP2D6 substrate - 0.8268 82.68%
CYP3A4 inhibition - 0.9058 90.58%
CYP2C9 inhibition - 0.8499 84.99%
CYP2C19 inhibition - 0.7702 77.02%
CYP2D6 inhibition - 0.8598 85.98%
CYP1A2 inhibition - 0.8307 83.07%
CYP2C8 inhibition + 0.8064 80.64%
CYP inhibitory promiscuity - 0.5946 59.46%
UGT catelyzed + 0.6000 60.00%
Carcinogenicity (binary) - 0.9900 99.00%
Carcinogenicity (trinary) Non-required 0.5592 55.92%
Eye corrosion - 0.9915 99.15%
Eye irritation - 0.6585 65.85%
Skin irritation - 0.8017 80.17%
Skin corrosion - 0.9556 95.56%
Ames mutagenesis - 0.5100 51.00%
Human Ether-a-go-go-Related Gene inhibition - 0.4905 49.05%
Micronuclear + 0.6659 66.59%
Hepatotoxicity - 0.7446 74.46%
skin sensitisation - 0.8887 88.87%
Respiratory toxicity + 0.5111 51.11%
Reproductive toxicity + 0.7444 74.44%
Mitochondrial toxicity + 0.5750 57.50%
Nephrotoxicity - 0.7313 73.13%
Acute Oral Toxicity (c) III 0.5452 54.52%
Estrogen receptor binding + 0.8169 81.69%
Androgen receptor binding + 0.7245 72.45%
Thyroid receptor binding + 0.5964 59.64%
Glucocorticoid receptor binding + 0.7644 76.44%
Aromatase binding + 0.7715 77.15%
PPAR gamma + 0.7608 76.08%
Honey bee toxicity - 0.7490 74.90%
Biodegradation - 0.7500 75.00%
Crustacea aquatic toxicity - 0.5449 54.49%
Fish aquatic toxicity + 0.8195 81.95%

Targets

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Proven Targets:

CHEMBL ID UniProt ID Name Min activity Assay type Source
No proven targets yet!

Predicted Targets (via Super-PRED):

CHEMBL ID UniProt ID Name Probability Model accuracy
CHEMBL5619 P27695 DNA-(apurinic or apyrimidinic site) lyase 99.29% 91.11%
CHEMBL1951 P21397 Monoamine oxidase A 95.06% 91.49%
CHEMBL1860 P10827 Thyroid hormone receptor alpha 94.22% 99.15%
CHEMBL1806 P11388 DNA topoisomerase II alpha 92.22% 89.00%
CHEMBL3251 P19838 Nuclear factor NF-kappa-B p105 subunit 92.00% 96.09%
CHEMBL2635 P51452 Dual specificity protein phosphatase 3 89.39% 94.00%
CHEMBL5339 Q5NUL3 G-protein coupled receptor 120 88.82% 95.78%
CHEMBL2581 P07339 Cathepsin D 88.55% 98.95%
CHEMBL3060 Q9Y345 Glycine transporter 2 87.42% 99.17%
CHEMBL3194 P02766 Transthyretin 86.69% 90.71%
CHEMBL4016 P42262 Glutamate receptor ionotropic, AMPA 2 86.00% 86.92%
CHEMBL1293249 Q13887 Kruppel-like factor 5 85.99% 86.33%
CHEMBL241 Q14432 Phosphodiesterase 3A 84.75% 92.94%
CHEMBL225 P28335 Serotonin 2c (5-HT2c) receptor 84.66% 89.62%
CHEMBL3137262 O60341 LSD1/CoREST complex 82.52% 97.09%
CHEMBL3476 O15111 Inhibitor of nuclear factor kappa B kinase alpha subunit 81.60% 95.83%

Plants that contains it

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Below are displayed all the plants proven (via scientific papers) to contain this compound!
To see more specific details click the taxa you are interested in.
Aronia melanocarpa
Malus pumila
Vaccinium angustifolium
Vaccinium corymbosum
Vitis aestivalis

Cross-Links

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PubChem 131752259
LOTUS LTS0243985
wikiData Q104667381